YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71145631, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIKSSTDDY AFWVRLAAIF STSTAFILVV IKLYAWLVTD SSAMLASTTD SILDLFASIM  60
   61 SIVILRFALA PADKEHSFGH GKAESLAGLV QASFVLGSAI LLIFSGVSRL LNPQAIVHGE 120
  121 VAIWVTIISI VLTLILVVFQ RYVIKRTGSI IISGDALHYQ SDLFLNLGVL AAIILSQGIW 180
  181 LQADGVFTIL VALYLVFGAG QIMVQSVSQL MDSELSDEEL SQIKTIVLKH KQALGIHELR 240
  241 TRQSGVQKFI QFHLELSDNL SLLEAHSIGD EIEAEICQVL APCEVFIHQD PSSVVQSEQS 300
  301 K

Type	Start	End	Confidence
Cytoplasmic	1	11	0.96
Transmembrane Helix	12	35	0.91
Non-Cytoplasmic	36	50	0.82
Transmembrane Helix	51	70	0.92
Cytoplasmic	71	85	0.94
Transmembrane Helix	86	107	0.90
Non-Cytoplasmic	108	120	0.81
Transmembrane Helix	121	143	0.91
Cytoplasmic	144	162	0.83
Transmembrane Helix	163	181	0.86
Non-Cytoplasmic	182	185	0.74
Transmembrane Helix	186	205	0.89
Cytoplasmic	206	301	0.91