YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71279912, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNKVLQPD FKLSFLLPKY WLTWLGVFIL YTISWLPFKL QLFMGRMLGR LLMKIGSKRK  60
   61 HVALTNLRLC FPDKSEDELQ ILLKKNFENT GIALFETGMG WWWPDWRVKR KFKVKGLEHL 120
  121 EKARKEGNGV LLLAMHYLSV EMNARGVGYG HPMVVFYRPH NNQLMEFFQF RGRGRSNKYM 180
  181 LGKRDVKGLM KALRDGEACI YLPDQDYGRN RSVFVPFFGV KEAATTTGTL IFARQKNVET 240
  241 MMIIPVRNDD GSGYTLEIMP PLENFPTQDN IADVTRINQE LEKAISRKPE QYMWLHRRFK 300
  301 TRPNPDDASL YK

Type	Start	End	Confidence
Cytoplasmic	1	19	0.62
Transmembrane Helix	20	38	0.94
Non-Cytoplasmic	39	312	0.63