YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146406, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTQVILPRI MQVGENASQE IANVLVSIGC TRPLIITDKM MVGLGYARRI QVSLGAHHIP  60
   61 AHIFDDTVPE PTVESIQAGV DKAREGNYDC IIALGGGSPI DSAKAIAILA KHGGVMQDYR 120
  121 FPRMVIEQGL PVIAVPTTAG TGSEVTKFTI ITDEKNDEKM LCVGIGFMPV AALVDYKLTI 180
  181 SLPPRTTADT GIDALTHAIE AYVSKKANPY SDSQAIAAIK LIGPNLRKVY HSGEDQDARE 240
  241 AMMLGSTLAG IAFSNASVAL VHGMSRPIGA FFHVPHGLSN AMLLPSVTAF SIPAAPARYA 300
  301 DCARAMGIAA EQDSNEVANQ KLLIELRSLN EELAVPTPQE FGIKRDEFFE VCQTMAEQAL 360
  361 ASGSPSNNPI EPSINEIISI YQGLWD

Type	Start	End	Confidence
Cytoplasmic	1	241	0.70
Transmembrane Helix	242	263	0.67
Non-Cytoplasmic	264	280	0.69
Transmembrane Helix	281	297	0.61
Cytoplasmic	298	386	0.69