YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71281051, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.53
Transmembrane Helix	11	29	0.56
Non-Cytoplasmic	30	334	0.94
Transmembrane Helix	335	355	0.85
Cytoplasmic	356	360	0.75
Transmembrane Helix	361	380	0.92
Non-Cytoplasmic	381	387	0.77
Transmembrane Helix	388	411	0.87
Cytoplasmic	412	431	0.91
Transmembrane Helix	432	453	0.92
Non-Cytoplasmic	454	465	0.82
Transmembrane Helix	466	486	0.88
Cytoplasmic	487	531	0.92
Transmembrane Helix	532	554	0.88
Non-Cytoplasmic	555	859	0.99
Transmembrane Helix	860	879	0.96
Cytoplasmic	880	887	0.80
Transmembrane Helix	888	908	0.93
Non-Cytoplasmic	909	915	0.70
Transmembrane Helix	916	935	0.94
Cytoplasmic	936	956	0.86
Transmembrane Helix	957	980	0.88
Non-Cytoplasmic	981	987	0.80
Transmembrane Helix	988	1010	0.91
Cytoplasmic	1011	1024	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLPRLAIDN AQFTLTIFLL LVLVGVVSYL NMPRSEDPQF DLPVTLIEVV YPGASPSDIE  60
   61 TLVVDPLEKE IADIENIKKI EAKIHNGAVR ITIDFLYGTD GETAFNKVKQ AVSTVRPSLP 120
  121 AGIAELLVLK ATPSSVAIMQ LALWSEPTNY KTMELHAKLL EKRLETIASV RKASIWGYPR 180
  181 QIVAIDINLP LLKYYDLALT DITQVLQGRA LNITPGFVDA STRRFNVKAS GNFTQLVDIE 240
  241 NTVISDNNMV SANGVLKVKD IAGVTFTDAE PSYLAYFDDI PAIFITVEQR EKTNIFVLTE 300
  301 QINQEVEQFK NSLPRGIKLE KLFQQADSVN VRVNGFFDNL TQGLVIVGLM ALLFLGIREA 360
  361 LVVILAIPIS FLMAIGWLDF SGYGLQQMSI VGLIIALGLL VDNAIVVTES VHRESKLGKD 420
  421 IRTAAASGTS KVAWAIASGT ITTMLAFLPM LMIQSNTGDF IRSMPVTVVL VLFASLLVAL 480
  481 TLTPLLASKL LVVIEKDDKP KKIKIKTLQH YANKFAEKSY TNTLTILMRN KAAVIVVSLL 540
  541 MLVAMFSLFG QVGVSLFPKA EKPMLLINVT TPANSSLAYT DKVLQQVRLH VKQYDLVDKV 600
  601 ALNIGNSNPR IYYNEVPKRG MIRFGQALLV LKDYQADEVT TLVKRLRDDF KNWQQAEITV 660
  661 KEFTQGPVTD QVIAIRLLSE SLTDLEHVAN DLSAKMRQLS GIVNIDNPIG MANTELALTI 720
  721 DYQQAALSGV SVERLDKTIS TILSGTTVGQ FNDVNGEDYP IMIRQKNPSI DSLSAIEISN 780
  781 NQRVSIPLEQ LATMELKKGD SDFFHYQKLR MAKVSADVET GYSVGEITKQ LVNYLEQYDL 840
  841 PAGMHFTLGG EEESRQKTFA GLTQVMLITA MGIFAVLVLQ FKSILQPMII FSSIPFAMAG 900
  901 SIIGLYLTGL SFSMMAFVGL ISLFGIVVNN AIILIDSTNV NLRLGLDKHS AVLKASAVRF 960
  961 TPILLTTLTT IGGLIPLTLY GGSLWQPLGV VLISGLCVSA ISSFLLVPIL TELFTERASE1020
 1021 NRAD