YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71281223, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.95
Transmembrane Helix	53	77	0.83
Non-Cytoplasmic	78	83	0.68
Transmembrane Helix	84	104	0.88
Cytoplasmic	105	131	0.85
Transmembrane Helix	132	155	0.84
Non-Cytoplasmic	156	163	0.85
Transmembrane Helix	164	186	0.91
Cytoplasmic	187	194	0.87
Transmembrane Helix	195	216	0.90
Non-Cytoplasmic	217	236	0.90
Transmembrane Helix	237	257	0.93
Cytoplasmic	258	276	0.86
Transmembrane Helix	277	299	0.91
Non-Cytoplasmic	300	319	0.90
Transmembrane Helix	320	341	0.92
Cytoplasmic	342	359	0.88
Transmembrane Helix	360	379	0.92
Non-Cytoplasmic	380	397	0.92
Transmembrane Helix	398	420	0.93
Cytoplasmic	421	438	0.96
Transmembrane Helix	439	460	0.93
Non-Cytoplasmic	461	467	0.72
Transmembrane Helix	468	487	0.92
Cytoplasmic	488	515	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMSNSNLNS SSVVQVGEFY ELEVGKDVQD SDHYNEDMAP TSVKDRTWNT WNVAALWVGM  60
   61 AICVPTYTLG GVLTAYFGLS VTEALITILL ANIVVLIPLT LNAYPGTKYG IPFPVLLRSS 120
  121 FGIKGSNIPC MIRALVACGW FGIQTMFGGV AIHILMSNLF ESWATLGGTG EVFGFFTFLA 180
  181 INLFIVIKGS ESIKILETVA APLLLAVGIG LMMWAYPQIS VTEILATPAN RPEGASFWGY 240
  241 FFGGLTAMVG FWATLSLNIP DFSRYVKSQK SQIAGQIIGL PATMFFFSAL GVVLTAASTT 300
  301 LVGETISDPI NLIGKIDSPV WVVIAMVMII IATLSTNTAA NVVSPTNDFQ NLAPKKISQT 360
  361 RGVLLTGLLG VLLMSWELLK KLGWIESDVS VEAMYTGWLL GYSSLLGPIA GIMVVDYFII 420
  421 KKQRLELAEL YKSEGIYGGF NKAGLLAFGI PVTLTLIAIT TGMFSWFYQF GWFTGSIMGG 480
  481 VVYFIAASKQ QAESSVGIQQ TASDASELKS LRNNA