YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147090, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.91
Transmembrane Helix	12	32	0.93
Non-Cytoplasmic	33	333	0.98
Transmembrane Helix	334	354	0.94
Cytoplasmic	355	360	0.78
Transmembrane Helix	361	382	0.89
Non-Cytoplasmic	383	387	0.76
Transmembrane Helix	388	411	0.88
Cytoplasmic	412	430	0.95
Transmembrane Helix	431	452	0.95
Non-Cytoplasmic	453	462	0.81
Transmembrane Helix	463	485	0.92
Cytoplasmic	486	521	0.93
Transmembrane Helix	522	543	0.88
Non-Cytoplasmic	544	851	0.92
Transmembrane Helix	852	869	0.96
Cytoplasmic	870	878	0.64
Transmembrane Helix	879	898	0.93
Non-Cytoplasmic	899	904	0.71
Transmembrane Helix	905	929	0.80
Cytoplasmic	930	953	0.87
Transmembrane Helix	954	973	0.93
Non-Cytoplasmic	974	981	0.72
Transmembrane Helix	982	1008	0.84
Cytoplasmic	1009	1029	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILSDLSVKR PVFATVLNLL IITFGIVAFL MLPLREYPDI DPPIVNISTT YPGASAAIVE  60
   61 TKITQLLEDR ISGIEGVKTI NSNSRVGRSS ITIEFNLDRD IDAATNDVRD RISRALNNLP 120
  121 EQSDPPEVSK ANDDESVIVW FVLQSETMST LALTDYANRY IVDRFAVVDG VARVRVGGGR 180
  181 TYAMKIRLNR ASMAARDITV QDIESTLRDE NVELPAGRIE SIDRDFSIRV ERSYLTEQDF 240
  241 ANMVINHSES KSVVRLGDVA EVFIGAQDDE NMFRGNGKNM VGLGVIKQSK ANTLDVVKTA 300
  301 RKEMIAIRDS LPVGTTITNS YDSSVFIQGS IDEVYNTLII AMVMVVLVIF LFLGNVRATL 360
  361 IPAVTVPVAL IGSMMALSWF GFSINLLTLL ALVLAIGLVV DDAIVVLENI YRRIENGQAP 420
  421 LMAAYEGGRE VAFAVIATTL VLVAVFVPLV FLSGNMGRLF TEFAIAIAAA VVFSSLTALS 480
  481 LTPMMCSKML KHRERSSSFG QKLDRAFARF EAAYGRALAS SIHQPLLIVL VLGLSLAAVF 540
  541 LLFNKLPSEY TPKEDRGNFF LIMQGAEGAS YESNVKNMHK IEEKLLGYQA EGELDRVLVR 600
  601 VPGFGGSGGI AIVGLPEWDK RSIDTFSFIN KINRDVQNVT DVRAFAIMRR GIGGGGGSNA 660
  661 PVSFVLQGNT FAELAQWRDI LITEAQKNPN LSNINSDYKE TYPQLLVQID RERAYDLGVP 720
  721 VGDIAQTLET MLGQRRVTSF VDRGEEYDVI VEGDEKQFQS PTDIDNLYVR SRTTEKLIPL 780
  781 ANLLTIAENA TSSRLNRYNR LRSITVTANL ADGYALGDAL DFLVEVTKNK LPEHVQVDYK 840
  841 GESLLLKESG NSILFVFLLA LLITYLVLAA QFESFIHPFV ILLTVPLALV GALAGLELMG 900
  901 MSLNIYSQIG IVMLIGLAAK NGILIVEFAN QLRDRGIAFE EALISAAQQR LRPIVMTTFT 960
  961 TVTSAIPLVL AVGPGAESRM VIGVVIFAGV SLASIFTLFI VPGAYYWLCR NTGSPQAIAN1020
 1021 EIEKAKQLG