YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71147149, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.48
Transmembrane Helix	13	29	0.61
Non-Cytoplasmic	30	335	0.85
Transmembrane Helix	336	355	0.76
Cytoplasmic	356	357	0.49
Transmembrane Helix	358	378	0.81
Non-Cytoplasmic	379	385	0.56
Transmembrane Helix	386	405	0.72
Cytoplasmic	406	429	0.81
Transmembrane Helix	430	451	0.91
Non-Cytoplasmic	452	463	0.75
Transmembrane Helix	464	489	0.88
Cytoplasmic	490	527	0.85
Transmembrane Helix	528	549	0.91
Non-Cytoplasmic	550	862	0.88
Transmembrane Helix	863	883	0.91
Cytoplasmic	884	889	0.76
Transmembrane Helix	890	910	0.91
Non-Cytoplasmic	911	918	0.59
Transmembrane Helix	919	938	0.89
Cytoplasmic	939	961	0.84
Transmembrane Helix	962	982	0.86
Non-Cytoplasmic	983	992	0.69
Transmembrane Helix	993	1016	0.87
Cytoplasmic	1017	1027	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNITQVAFTY RKSVFLIIAV LLINGLFAYF TLPAQEDPTI TIREAIVSTS FPGMAPDRIE  60
   61 QLITKKLEEE IRKIPQVKEI KSSSATGISI IHVKIYDRYF NLDDIWQNLR NKVTAAHNKM 120
  121 PSGTHTPFVN DEFGDVSVVT LALTADGFDL GEMYDIAQHI RDTLYGVEGT KKIEILGRQE 180
  181 ERIFLEASNA KLAQLGISPQ SLINELQKQN IVRSGGEVNT GAISFIVEPS GNFNSLVEIG 240
  241 DTYISIPNTE DFIALKDVVT LRRDFIDPPD KTAYLNGQSA IFFAISMLPE NNLLEYAPRV 300
  301 LNKINEIESS LPIGYNLEIA TYQADQVAKT INGVSVNVLQ TLAIVLVVVI LFLGLRTGLI 360
  361 VGAIVPFVML TTLSIMQFSD MKLERMSLAT LIISLGLLVD NGIVIAEDFK RRLEDGVDRY 420
  421 NAMLQGSKEL AIPLLSSSVT TVLFFLPLML AEHVAGEYTR SISLVILITL LTSWILALCV 480
  481 TPLLCYFFIT LPENKKAKVE NNESTREEPG KFYRYYETFL HWLLKHKALF MTAMLALFIG 540
  541 SILSMKYVAK QFFPDSDRTQ ILVNIDLPNG TSSTETNRQM KDIFTWLEDE TRFDFIESYS 600
  601 AYVGFSGPRF VMSLNPEDPA QNKGFMVLNV KDETDISATV LSLDEQIEHD FPNVSARVKK 660
  661 MFLGPSDSST IKIQVKGPDK EVIYKKAQQI MAVLHDVPNT IDIRTDWENL ITKIDVQIDQ 720
  721 HRAKRSGLTS EEIAQALDAY FSGSKITEFR EGDNIIPVVL RAEQAERQSL DRLRTLNIYS 780
  781 NKTGKTVPLF QVANLAPYNQ FSIIHHEDLF RTISIQARNT DVAAEDLKLI IDAKIQALAA 840
  841 DLPINHNIEY DGVIKESRAA QKALGASMPI VLGLILILLV AQFNSFRQAA VITLTIPLSF 900
  901 IGAVLGLFLM QAPFGFMVTL GLYSLAGIII NNAIVLIDRI KIETASGKSD YQAVVDACLT 960
  961 RLRPIAMTTI TTVMGLLPLI IGKDPLFYGM ANVIAFGLGI GTILTLAVVP ALYCGFYKIT1020
 1021 DVQVEPV