YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71281475, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.92
Transmembrane Helix	14	34	0.92
Non-Cytoplasmic	35	53	0.82
Transmembrane Helix	54	73	0.95
Cytoplasmic	74	91	0.92
Transmembrane Helix	92	113	0.94
Non-Cytoplasmic	114	145	0.95
Transmembrane Helix	146	165	0.94
Cytoplasmic	166	189	0.90
Transmembrane Helix	190	213	0.87
Non-Cytoplasmic	214	232	0.90
Transmembrane Helix	233	253	0.94
Cytoplasmic	254	263	0.81
Transmembrane Helix	264	284	0.94
Non-Cytoplasmic	285	319	0.93
Transmembrane Helix	320	339	0.93
Cytoplasmic	340	347	0.89
Transmembrane Helix	348	372	0.87
Non-Cytoplasmic	373	417	0.95
Transmembrane Helix	418	439	0.83
Cytoplasmic	440	459	0.75
Transmembrane Helix	460	482	0.87
Non-Cytoplasmic	483	488	0.75
Transmembrane Helix	489	509	0.94
Cytoplasmic	510	530	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVANHGLLKG MNPVTTLVSM AIITLFVLCG VFFTEQTAAL FTAVSGWILS YLKWYYIGIV  60
   61 AIFLFFCIWL AFSRYGNLRL GDDDSRPEYS NFSWFSMLFS AGMGIGLVFW SIAEPIYHFQ 120
  121 SNPFITEGLT PEAAQVAMRL TFFHWGLHPW AIYVVVGLSL AYFSYRKKLP LTIRSALYPL 180
  181 IGKKMYGPIG HAVDVLAVFG TVFGVATSLG LGVTQMNTGL NTMFGMEVSL SNQIILIAVI 240
  241 SAIATISVVS GVGKGVKILS EVNMWLTIGI LVFLLCFGPT RYLLGAVLQS TGDYLGNVLS 300
  301 LSTWTDANEN SQWQSWWTAF YWGWWMSWAP FVGMFIARIS KGRTIREFIV GVLLVPTMLG 360
  361 FIWLTLFGGT AIYLELFHQV TNEAGELVAA VGQAGIVDAV KADVTSALYV TLDKLDAGFM 420
  421 GTIAAFMATL LIATYFITSS DSGTLVVTTI LSMGNEHPPT AHRVAWGLGE GAVAAILLLV 480
  481 GGLKGLQTAA ITAALPFSLV MIVMMWGLMR SLKEEKLTPA VYAPAKLVTN