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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|71147455, gi|...
Protein type: Transmembrane
Type Confidence: 0.59
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAIENVSRR GFLKVAGITS GTFVLGMNLP LATAQVKSST AALSHELNFF VSIASDSMVT  60
   61 LVCHRSEMGQ GIRTSVPQII AEELEADWQK VTVVQAKADA KYGSQGTAGS ASIRSHFTSI 120
  121 RQIGAVARDM LEQAAANIWQ VQRNSVKAEK HFVVHTATGE KISFGELASH AAKLTPPDSS 180
  181 KVKLKNSADF SLIGKDVKLV DLDNIVAGKA QYAQDIQLPD MLIATIVRPP VVGGSLVSFD 240
  241 ASETLKIKGV VDVIALKPRG IPVTTNPLSG VAVLADNTWA AIEGRKKLKI KWQHGDKASH 300
  301 NSAKFIKQLA KQVNQQGEMV AKKGDIYNHK YLDENTVEAT YTVPYIHHAP METPAATAIV 360
  361 KGKKCTIWAG TQNPQWAKSN VATELGLGKD EHDNIELNVT LMGGAFGRKS KADFIIEAVE 420
  421 LARASKRPVK VIWSREDDIQ HGFYHSISAN YCKAELTGNG SADYWVSRNA YPPIGWLWNP 480
  481 EAKMPSDDQL ALGFGDIPFA LNNLSIEKHA VDSFVRPGWV RSVACINNGF ALGSFVDELA 540
  541 VKAKLPTRQM WLNLLGDDRH VDPNKNGFKY SNYNLSLTDH PVDTKRMKDL INLISDKANV 600
  601 EQELPENQGW GISFLRSFGS FVAAATKVEV VNNKVTVLEM HTAVDCGIVV TPDRVKAQME 660
  661 GAMVFGLSIA LMGEITVDEG KVQQSNFHDY PVTRMNQVPE MHVHIVKSDA PPGGIGEPGV 720
  721 PPVAPSITNA IYHASKTRIR DLPVNKVFTV 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle