YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71281780, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.77
Transmembrane Helix	7	26	0.83
Cytoplasmic	27	41	0.81
Transmembrane Helix	42	63	0.93
Non-Cytoplasmic	64	69	0.80
Transmembrane Helix	70	86	0.94
Cytoplasmic	87	97	0.74
Transmembrane Helix	98	117	0.93
Non-Cytoplasmic	118	127	0.75
Transmembrane Helix	128	149	0.90
Cytoplasmic	150	156	0.80
Transmembrane Helix	157	176	0.95
Non-Cytoplasmic	177	182	0.79
Transmembrane Helix	183	204	0.91
Cytoplasmic	205	214	0.93
Transmembrane Helix	215	235	0.94
Non-Cytoplasmic	236	246	0.75
Transmembrane Helix	247	265	0.96
Cytoplasmic	266	294	0.88
Transmembrane Helix	295	314	0.91
Non-Cytoplasmic	315	321	0.68
Transmembrane Helix	322	339	0.96
Cytoplasmic	340	349	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYIIATAVTA FFFAFLAIKF FNPVAIEIGL VDKPCERKQH AGHIPLIGGI SIFLAVLAAS  60
   61 LLWLPNTLEL RMYLIASAMM VFIGALDDKF DLRVRVRIVG QIIIASLMIY GVGGYISNLG 120
  121 NLFGFGDVTL GPVGIVFTYV GIIVVINAYN MIDGIDGLIG SLSINTFTSI AILFIMSGQT 180
  181 NYLSYPLILA TATVPYLMYN LGFFEKFFNK ECKKIFMGDA GSMFVGLSVI WLLTMATQGE 240
  241 QASFRPVTAL WICAIPLMDM LAIVVRRYKN GKSPFKPDRD HLHHIVQRAG LSSKQALVAI 300
  301 SSAAAAMSVI GLAGEYFSIP DVIMLTGFIV TFACYVMVIR RITKFEKVQ