YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71281834, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.96
Transmembrane Helix	20	40	0.91
Non-Cytoplasmic	41	55	0.80
Transmembrane Helix	56	77	0.87
Cytoplasmic	78	84	0.82
Transmembrane Helix	85	107	0.90
Non-Cytoplasmic	108	113	0.76
Transmembrane Helix	114	138	0.86
Cytoplasmic	139	158	0.85
Transmembrane Helix	159	179	0.91
Non-Cytoplasmic	180	189	0.80
Transmembrane Helix	190	211	0.91
Cytoplasmic	212	236	0.93
Transmembrane Helix	237	259	0.88
Non-Cytoplasmic	260	278	0.87
Transmembrane Helix	279	297	0.88
Cytoplasmic	298	303	0.77
Transmembrane Helix	304	323	0.89
Non-Cytoplasmic	324	329	0.59
Transmembrane Helix	330	351	0.90
Cytoplasmic	352	362	0.74
Transmembrane Helix	363	383	0.90
Non-Cytoplasmic	384	389	0.75
Transmembrane Helix	390	409	0.92
Cytoplasmic	410	428	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGNIPTASV SHQTGADESY HFAFASMTTL FFIWGFITAL NDILIPHLKA AFDLNYVQAM  60
   61 LVQFCFFGAY FIMSPIAGKI ISKIGYLKGI ITGLLTIAAG CSLFYPAAEI GVYWVFLAGL 120
  121 FVLASGITIL QVSANPYVAS LGKEKTAASR LNLAQAINSL GHTLGPIFGS ALIFGAVAHT 180
  181 EVIDAKSVQL PYLLLAGATI LVAIGFKFLH LPVIQSIAET PDDNASDGKS IWQQKPLLLG 240
  241 ALGIFVYVGA EVSIGSFLVN YFTQKDIAGL TEKQAGDMVS YYWGAAMIGR FVGAYLTRII 300
  301 KPSYVLACNS ILSMTLLIVT MSSSGHFAMW AVISVGFFNS IMFPTIFTLA IRGLGPLTSK 360
  361 GSGLLCQAIV GGAILPLIQG YVADISSVQA SFIVPACAYI YIFGYALYTA KYRANQKNEI 420
  421 TTPVEANL