YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71282527, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.90
Transmembrane Helix	19	42	0.85
Non-Cytoplasmic	43	48	0.77
Transmembrane Helix	49	68	0.92
Cytoplasmic	69	74	0.82
Transmembrane Helix	75	96	0.90
Non-Cytoplasmic	97	101	0.78
Transmembrane Helix	102	122	0.93
Cytoplasmic	123	131	0.74
Transmembrane Helix	132	154	0.89
Non-Cytoplasmic	155	163	0.86
Transmembrane Helix	164	185	0.90
Cytoplasmic	186	191	0.76
Transmembrane Helix	192	212	0.94
Non-Cytoplasmic	213	230	0.86
Transmembrane Helix	231	251	0.92
Cytoplasmic	252	314	0.61
Transmembrane Helix	315	339	0.83
Non-Cytoplasmic	340	343	0.34
Transmembrane Helix	344	365	0.88
Cytoplasmic	366	372	0.49
Transmembrane Helix	373	394	0.84
Non-Cytoplasmic	395	399	0.50
Transmembrane Helix	400	423	0.83
Cytoplasmic	424	449	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEILYQVEDK PPIGTSILLA AQHLLAALGA IITVPLVVGG VLNLPVEDIV VLVNAAMLVS  60
   61 GVVTIIQCKG VGPVGIRLPC VMGTSFTFVG VSIAIGFEHG VAGILGSALV ASLVMIIGSF 120
  121 FMPMIRRFFP PIVTGTVVTL IGLSLIPVAV DWFAGGQVGQ EGYASLPNLA IGLFVLTTVI 180
  181 LLSIFGKGIL SAAAVVIGMA LGFMACVVLG LVDFKPVQDS PLFALPSPFH FGLTFPISGI 240
  241 IGMSIAYLVT IVESTGDFLA LSNVTKTKLT GKKLSSGILC DGLGSALASL FSTTPFSSFS 300
  301 QNVGIVGMTG VASRYVVAIT GAMLILAGLF PIIGALVVAI PLPVLGGAGL VMFAMIITAG 360
  361 VNILSHTKHT KRNGIIIAVS IGAGMAVTVR PELLSHLPDF LKIILASGIT TGSVIALLLN 420
  421 AVLPDGDIIV ETEEENPSNN EVESSPNLI