YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87083517
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.93
Transmembrane Helix	16	36	0.95
Non-Cytoplasmic	37	58	0.87
Transmembrane Helix	59	82	0.90
Cytoplasmic	83	100	0.85
Transmembrane Helix	101	122	0.90
Non-Cytoplasmic	123	145	0.88
Transmembrane Helix	146	168	0.89
Cytoplasmic	169	181	0.88
Transmembrane Helix	182	205	0.91
Non-Cytoplasmic	206	236	0.87
Transmembrane Helix	237	257	0.89
Cytoplasmic	258	266	0.88
Transmembrane Helix	267	290	0.89
Non-Cytoplasmic	291	301	0.88
Transmembrane Helix	302	322	0.92
Cytoplasmic	323	335	0.75
Transmembrane Helix	336	358	0.89
Non-Cytoplasmic	359	375	0.87
Transmembrane Helix	376	398	0.91
Cytoplasmic	399	407	0.89
Transmembrane Helix	408	430	0.87
Non-Cytoplasmic	431	450	0.87
Transmembrane Helix	451	472	0.93
Cytoplasmic	473	512	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRRWLFSTN HKDIGTLYFI FGIWSGMVGT ALSLLIRAEL GQSGSLIGDD QIYNVIVTAH  60
   61 AFVMIFFMVM PIMIGGFGNW LVPLMLGAPD MAFPRLNNLS FWFLPPALTL LLVGGAVESG 120
  121 AGTGWTVYPP LSAGIAHAGA SVDLSIFSLH LAGISSILGA VNFITTIINM RSVGMSLDRI 180
  181 PLFVWAVGIT ALLLLLSLPV LAGAITMLLT DRNLNTSFFD PAGGGDPILY QHLFWFFGHP 240
  241 EVYILILPGF GMISHIISHE SGKKEAFGTL GMIYAMLAIG VLGFVVWAHH MFTVGMDVDT 300
  301 RAYFTAATMI IAVPTGIKIF SWLGTLHGTQ LVFTPSLLWA AGFVFLFTVG GLTGVVLANS 360
  361 SIDIILHDTY YVVAHFHYVL SMGAVFAIFA GVAHWFPLFT GLTLQARWLK IHFFTMFVGV 420
  421 NLTFFPQHFL GLAGMPRRYS DYPDAYMTWN VISSVGSVIS FVATLGFIFI IWESFVSLRP 480
  481 TLFSTHLSTS IEWQHSFPPA EHSYNELVFI SQ