YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RFT1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.70
Transmembrane Helix	17	36	0.87
Non-Cytoplasmic	37	42	0.57
Transmembrane Helix	43	62	0.68
Cytoplasmic	63	82	0.91
Transmembrane Helix	83	105	0.93
Non-Cytoplasmic	106	120	0.81
Transmembrane Helix	121	142	0.89
Cytoplasmic	143	158	0.78
Transmembrane Helix	159	177	0.90
Non-Cytoplasmic	178	184	0.64
Transmembrane Helix	185	204	0.93
Cytoplasmic	205	334	0.97
Transmembrane Helix	335	354	0.89
Non-Cytoplasmic	355	373	0.77
Transmembrane Helix	374	395	0.86
Cytoplasmic	396	403	0.84
Transmembrane Helix	404	424	0.84
Non-Cytoplasmic	425	430	0.57
Transmembrane Helix	431	451	0.70
Cytoplasmic	452	461	0.67
Transmembrane Helix	462	489	0.76
Non-Cytoplasmic	490	498	0.68
Transmembrane Helix	499	519	0.93
Cytoplasmic	520	541	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSQEVLGQA ARLASSGLLL QVLFRLITFV LNAFILRFLS KEIVGIVNVR LTLLYSTTTF  60
   61 LAREAFRRAC LSGGAQRDWS QTLNLLWLTV PLGIFWSSCL GWVWLQLLEV PDPDVVPYYG 120
  121 TGVLFFGLSA VVELLGEPFW VLAQAHMFVK LKVLAESMSV ILRSVLTALL VLWLPHWGLY 180
  181 IFSLAQLLYT TVLVLCYAIY LIQLLRSPES AKQLTLPVSR VTQLLPSISR SRAFVNWKEA 240
  241 GLAWSFFKQS FLKQILTEGE RYVMTFLNVL NFGDQGVYDI VNNLGSLVAR LIFQPVEESF 300
  301 YLFFAKVLER EKDASLQKQD DVAVAAAVLE SLLKLALLTG LTMTVFGFAY SQLALDIYGG 360
  361 AMLSSGSGPV LMRCYCLYVL LLAINGVTEC FMFAAMSKEE VDRYNFTMLA LSSSFLVLSY 420
  421 LLTSWCGSVG FIMANCFNMG IRITQSLSFI HHYFRESPHR PLAGLRLSPV LLGVFILSAG 480
  481 ITSVSEAFLC CERGWPARLA HIAVGTICLG VTLGTAFLTE TKLIHFLRTQ LGRSRLSDKM 540
  541 T