YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74198353
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.79
Transmembrane Helix	17	36	0.54
Non-Cytoplasmic	37	57	0.60
Transmembrane Helix	58	80	0.89
Cytoplasmic	81	95	0.62
Transmembrane Helix	96	116	0.93
Non-Cytoplasmic	117	123	0.66
Transmembrane Helix	124	146	0.86
Cytoplasmic	147	182	0.65
Transmembrane Helix	183	200	0.54
Non-Cytoplasmic	201	201	0.32
Transmembrane Helix	202	224	0.61
Cytoplasmic	225	301	0.91
Transmembrane Helix	302	324	0.82
Non-Cytoplasmic	325	340	0.69
Transmembrane Helix	341	363	0.92
Cytoplasmic	364	372	0.80
Transmembrane Helix	373	395	0.89
Non-Cytoplasmic	396	447	0.89
Transmembrane Helix	448	469	0.90
Cytoplasmic	470	489	0.83
Transmembrane Helix	490	512	0.56
Non-Cytoplasmic	513	517	0.60
Transmembrane Helix	518	538	0.92
Cytoplasmic	539	570	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKARDQTHQ EGCCGSLANY LTSAKFLVYL GHSLSTWGDR MWHFAVSVFL VELYGNSLLL  60
   61 TAVYGLVVAG SVLVLGAIIG DWVDKNARLK VAQTSLVVQN VSVILCGIIL MMVFLHKNEL 120
  121 LTMYHGWVLT VCYILIITIA NIANLASTAT AITIQRDWIV VVAGENRSRL ADMNATIRRI 180
  181 DQLTNILAPM AVGQIMTFGS PVIGCGFISG WNLVSMCVEY FLLWKVYQKT PALAVKAALK 240
  241 VEESELKQLT SPKDTEPKPL EGTHLMGEKD SNIRELECEQ EPTCASQMAE PFRTFRDGWV 300
  301 SYYNQPVFLA GMGLAFLYMT VLGFDCITTG YAYTQGLSGS ILSILMGASA ITGIMGTVAF 360
  361 TWLRRKCGLV RTGLFSGLAQ LSCLILCVIS VFMPGSPLDL SVSPFEDIRS RFVNVEPVSP 420
  421 TTKIPETVFT TEMHMSNMSN VHEMSTKPIP IVSVSLLFAG VIAARIGLWS FDLTVTQLLQ 480
  481 ENVIESERGI INGVQNSMNY LLDLLHFIMV ILAPNPEAFG LLVLISVSFV AMGHLMYFRF 540
  541 AQKTLGNQIF VCGPDEKEVT DENQPNTSVV