YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88606845, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCFLSCKPHP STAVIRSKLL LGSVMMSMAI VMAGNDVRAH DDVSALDTGG AGYFYVGLDY  60
   61 SPAFSKIRDF SIRESNGETK AVYPYLKDGK SVKLESHKFD WNTPDPRIGF KDNMLVAMEG 120
  121 SVGYGIGGAR VELEIGYERF KTKGIRDSGS KEDEADTVYL LAKELAYDVV TGQTDKLTAA 180
  181 LAKTSGKDIV QFAKAVGISH PTIDGKVCRT KKPSSGSNTY FGKYGEETDN GSSGEGVVAV 240
  241 CGAMSENTST SKGSVTAQTL GDFVSVTLKG DGSKNWPTST TKSSKVPAAV TNDNAKAVAG 300
  301 DLTKLTPEEK TIVAGLLAKT IEGGEVVEIR AVSSTSVMVN ACYDLLSEGL GVVPYACVGL 360
  361 GGNFVGVVDG HITPKLAYRL KAGLSYQLSP EISAFAGGFY HRVVGDGVYD DLPAQLPTN

Type	Start	End	Confidence
Signal Peptide	1	33	0.97
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	419	0.99