YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88606868, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWCVMTSCDS QYSPSMHRRM VMAIVVVACT LVVETIGGFV SHSLVLLSDA GHVFIDLVAL  60
   61 ILSFAAYRLA TKEADEQRSY GYHRFQVMAA FVNGISWFVI AALIVIESIK RFVNPVEVHG 120
  121 HLMLPVAVVG FAANIFVFCM MYRRGEHNLN IRSAVLHVIG DLLCSVAAIA SSIIIRFSGW 180
  181 QIIDPMLSLL VSTVMLISAF SIVKNSSNIL LEGKPYNIDV GELQRNITSA IPNVIDVHHV 240
  241 HLWSLTAEYP IMTMHVRIAC GSSDVASSVQ VVKSIKKLLQ ERFSISHVTI EIEHEECSDA 300
  301 N

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	42	0.93
Non-Cytoplasmic	43	49	0.78
Transmembrane Helix	50	71	0.90
Cytoplasmic	72	84	0.92
Transmembrane Helix	85	106	0.89
Non-Cytoplasmic	107	120	0.82
Transmembrane Helix	121	142	0.92
Cytoplasmic	143	153	0.91
Transmembrane Helix	154	175	0.93
Non-Cytoplasmic	176	181	0.77
Transmembrane Helix	182	203	0.88
Cytoplasmic	204	301	0.96