YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88597946, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTLRFDKRF KVLQSAMLFS TALSFLTVIV IAGCLAFKSK LFFAEVPLSD FIFGTTWNPD  60
   61 SKVINGQLVG SFGILPLLSG TLLIVIVSVT VALPLGLLSA IYVSEYSDKR VRNTFNTLLE 120
  121 ILCGIPTVVY GYFAVVFLSP NIRSLAKFCG FNAQSENALV AGIAIGIMIL PFITLLIENA 180
  181 LRSVPKILRY GSMALGATRA ETTWHIVVPY ALPDICSSVI LSISRVIGET MIVLMAAGVT 240
  241 ASFTFNPLHS VTTITVQIAT ILTGDQNFQS VHTSSAYALG LTLFIITWML NLLAAFITRK 300
  301 TRIPSRT

Type	Start	End	Confidence
Cytoplasmic	1	15	0.91
Transmembrane Helix	16	37	0.90
Non-Cytoplasmic	38	76	0.91
Transmembrane Helix	77	102	0.85
Cytoplasmic	103	114	0.90
Transmembrane Helix	115	136	0.90
Non-Cytoplasmic	137	157	0.90
Transmembrane Helix	158	177	0.95
Cytoplasmic	178	225	0.87
Transmembrane Helix	226	248	0.75
Non-Cytoplasmic	249	275	0.84
Transmembrane Helix	276	297	0.93
Cytoplasmic	298	307	0.93