YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88598269, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILHTINDWK YTVNWRLPMR KALLLFTLVL MKISSGAYGT SLEEALDKTL NNNLAIKANM  60
   61 YKTKAKKREV VNSAIANILP QVLYELKIQK HGSHQSSYSL ISLTQPVFNG TAIFSIEKAK 120
  121 HLYAIQDITF SMEQQKTLLG TIKTYMSALS AYEVDKLNEH NLKVMQEHLL SAEKRFSVGE 180
  181 ITKTELMQAK AKLAQAKSEA MSAKGRLRAV EASYTHMVGE QPIDLQYPKR PLQIPQSLEE 240
  241 AFDIAKSNNL YLRLSSNLYQ VSKRDVEIAI AKKVLPSLHV TATETFPGND VGRTIHRLEF 300
  301 TLRLPIFEHG VGLIDIDRTN QERQHNLFSM HEAVKKMEAS IISAWEDLIT SRFVLQSASE 360
  361 TVKYTEVALE AITQEANLNL KTTLDVLDIE QELLKAKVNL VNSQSNLIIN QYNLLALIGQ 420
  421 LSID

Type	Start	End	Confidence
Signal Peptide	1	36	0.93
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	424	0.99