YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88607252, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKNYNNLF LGSIMMSLAV LITCQGAQAR DAAKSTFEVE KPQYFYIGLD YSPAFSNIRN  60
   61 FTIQESNGET KAIYPYIRGD KEIILDASRF DWNMPNPRIG FKNSTLVAVG SSIGYAMGSM 120
  121 RLEIEVSHER FKSRGRYIGN EREEESDTIY LLAKELGHST VTEKTEDLVS ALTKVKGEDI 180
  181 VRLANALEKT RPDIGRKICR TRSITGGKNY GKYNRYTSWL KDTNNLTALC GDIGGNSDKH 240
  241 EHHNMIQNSF KDFAREALLG GSTNWPTTTG DKTRGNDNAK ALARDLITVL SREEKIAVAG 300
  301 LMVNTIEGGE VVDIGEISST SVMVNVCYDF LSKEGSIVPY GCMGLGSNFV GIVKGHFTPK 360
  361 PAYRLKAGVS YKLFSGVDIF AAGFYHRVFG STEYTDIPVE YLIDDVSPYG RTKETAMADF 420
  421 RMSYAGGEFG MRFAF

Type	Start	End	Confidence
Signal Peptide	1	29	0.96
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	435	0.99