YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88607440, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKGNGSIFM TSVLGVRCMS ARSCRKLFLG SIMLSFAVLM TSQEVQAMHS GQNISDMGES  60
   61 NYFYVGLNYS PVFSKIRDFT ISESSGETKA VYPYLRDGKS VKLETNRFDW SVPDPQIRFK 120
  121 NSVLLAMEGS IGYTMGALRF EVEVGYERFK IKSRYGKGIR GEESDTIYLL AKELAYDVVA 180
  181 NKTDALAAAL AKVKGQDIVH FANTLKITHP WINEQICNRG NDLLDNGGLK DSKKGSCNSK 240
  241 DKKGGKLEQS FTAALGDQGA QKWPKINNGG KKLTGKSNGK PYALDASATV AGDISVLDRE 300
  301 SKVMVAGLLA RTIEGSEIVE IKAISSTSVM LNACYDIFSE GFGIMPYTCI GLGSNFVSIV 360
  361 DGKVTPKLSY KLKAGLSYKF SPEVSAFAGG FYQRVVGDGE YVDLPVKRLS YDLSPQGRTK 420
  421 ETAVAKFSMS YVGGEFGIRF AF

Type	Start	End	Confidence
Signal Peptide	1	47	0.80
N-region	1	38
H-region	39	44
C-region	45	47
Cleavage Site	47	48
Non-Cytoplasmic	48	442	0.99