YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88600698, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSRSVPITR FFPNFITFCG LCLGLTSIRF SLIGRWELAI GAIVIAAIMD GIDGRLARMF  60
   61 ESSSNFGAEL DSLADMVSFG VAPAFMLYLW ELHNIRVFGW GITMVFVVCM AVRLARFNVT 120
  121 ATLPGTDGEL KKFFYGVPAP AGGILAVLPV ILIFASNNCS FVVLFATEHY FLLGYLSVIS 180
  181 MLTVSSIPTF SLKNVAVPHY LESALIFLFV TIAVALILKP WLTISVLALC YICSMPLSCF 240
  241 TYSKR

Type	Start	End	Confidence
Cytoplasmic	1	10	0.89
Transmembrane Helix	11	30	0.94
Non-Cytoplasmic	31	37	0.66
Transmembrane Helix	38	57	0.87
Cytoplasmic	58	69	0.84
Transmembrane Helix	70	90	0.86
Non-Cytoplasmic	91	96	0.79
Transmembrane Helix	97	117	0.92
Cytoplasmic	118	132	0.93
Transmembrane Helix	133	155	0.92
Non-Cytoplasmic	156	170	0.76
Transmembrane Helix	171	190	0.91
Cytoplasmic	191	198	0.71
Transmembrane Helix	199	217	0.93
Non-Cytoplasmic	218	222	0.70
Transmembrane Helix	223	242	0.89
Cytoplasmic	243	245	0.75