YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88608879, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSRKERKQD VFTKCATCFG IGYLSPLPGT LGSILAFVFL PLIIFFPLSI AYVILISSFL  60
   61 FLIGIWSCDK YETTYSLKDP KEVIIDELVA QLILFICISY VFRSSFELSI MLLLCVTSFV 120
  121 LFRFFDIVKP WPISFVQKNI HGGFGVMLDD LLAAFATFIM ISIIAYVLF

Type	Start	End	Confidence
Cytoplasmic	1	14	0.89
Transmembrane Helix	15	39	0.81
Non-Cytoplasmic	40	42	0.60
Transmembrane Helix	43	66	0.86
Cytoplasmic	67	82	0.91
Transmembrane Helix	83	102	0.74
Non-Cytoplasmic	103	107	0.64
Transmembrane Helix	108	127	0.90
Cytoplasmic	128	145	0.66
Transmembrane Helix	146	168	0.89
Non-Cytoplasmic	169	169	0.75