YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88599178, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISKFNIRKV CYTLILISMS IIPNNSYCTN LDEALQAALS NNPNIKAKFY HSLGNKQKIK  60
   61 LNSISKFLPS IAYSVQVHQP ELSLTNNSNR TMSLIVTQQL FNGGADAAAF QQSKYLTNIE 120
  121 DIDFSLEKQN VILNTVKAYM KVLTTAEVYK LTQHTKKVLA EHLTATQKRF SLGEVTKTDV 180
  181 SLATARLSSA TSELIKAHGE MKVAEANYIH ITGEIPTDLQ NPAIPAIPSS VEEALEIAQK 240
  241 NNLSLQASHN GYKAAKQGIL MAIAHLLPSI SISSINSYTY SNIPNTNPKK IDNLFEIKMS 300
  301 LPIFQQGLNI AAIAQSKLAA QHKMYSHYEV LNTIKESVIS NWENIFTTNS MLQAAQDSVR 360
  361 YSEVALFGIK QEAELNLRTV LDVLDAEQEL LKAKVNLVNV QSNVVISIYN LLALIGQLNI 420
  421 NYI

Type	Start	End	Confidence
Signal Peptide	1	28	0.63
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	423	0.98