YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88599272, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.93
Transmembrane Helix	8	29	0.94
Non-Cytoplasmic	30	35	0.87
Transmembrane Helix	36	58	0.92
Cytoplasmic	59	67	0.88
Transmembrane Helix	68	89	0.94
Non-Cytoplasmic	90	129	0.91
Transmembrane Helix	130	153	0.86
Cytoplasmic	154	177	0.86
Transmembrane Helix	178	199	0.93
Non-Cytoplasmic	200	231	0.82
Transmembrane Helix	232	256	0.85
Cytoplasmic	257	265	0.77
Transmembrane Helix	266	286	0.95
Non-Cytoplasmic	287	322	0.80
Transmembrane Helix	323	347	0.86
Cytoplasmic	348	385	0.91
Transmembrane Helix	386	410	0.84
Non-Cytoplasmic	411	448	0.54
Transmembrane Helix	449	476	0.68
Cytoplasmic	477	486	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKSLRSIIF IIGVFCLIFS LLMFIPVAVD YCTGYIWQNF FCACLFTLFF SLICISIGRL  60
   61 SNLKKTEVFI VTTVVWIVLS VIAAVPFVFE DKIAYIDAFF ESVSGLTTTG ATILTNLQNQ 120
  121 SPGILIWRSL LNAIGGLGII VSGIFLLPCL KVVSLHELYR SESSDQSRKF KYGIVRSSMY 180
  181 IFAIYCLLII LCSMLYWIAG MSWFDAICHA MSTVSTGGFS NYDDSLQHFN NVYIEVIAII 240
  241 FMLLSSCPLI LYVKVITKQC FYDEQVIFFG IILFLFIIIS AINCYFDEIT AGYSLPNVLR 300
  301 YSAFSVVSLS TSTGFINYDY SNWHFFSVFG VFIMLIGGCS GSTNSGIKVY RIMLLLKAFN 360
  361 AYISDLLHHS RTSTIRYNRR YVSKNFIGDI GLFFFLYVFV LFIGCILISS SGVNFITAFS 420
  421 TVAAAFSNTG PGMGDIVGPS ANYYHMLPLV KVFLSCLMLM GRLEIIPFFA CAYLIVNGLF 480
  481 DSKSKC