YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88658585, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEEQSSKFF PITRLFPNIV TLLGLCAGLT SIKFTFIGKW ESAVMFIIIA ALIDGMDGRI  60
   61 ARFLNSTSGF GAQLDSFADF LNFGVAPAFL LYFWSLKQIK VIGWMLVMMF VICMSIRLAR 120
  121 FNVSLYEEKK LDWHKFFFVG VPAPLGAVLS LIPIMLTFYY HDNHWLVTNL SDQNNVAIYF 180
  181 AVIAFLLVSN IPTFSAKHIY IPKNLSYIFI LLFGIFIVFA ITKPWITFPV VGMMYILSIP 240
  241 ISSMVYIYIM CKTKGKII

Type	Start	End	Confidence
Cytoplasmic	1	14	0.85
Transmembrane Helix	15	36	0.87
Non-Cytoplasmic	37	41	0.68
Transmembrane Helix	42	61	0.86
Cytoplasmic	62	75	0.75
Transmembrane Helix	76	94	0.89
Non-Cytoplasmic	95	100	0.80
Transmembrane Helix	101	121	0.92
Cytoplasmic	122	135	0.91
Transmembrane Helix	136	158	0.93
Non-Cytoplasmic	159	175	0.93
Transmembrane Helix	176	194	0.96
Cytoplasmic	195	204	0.77
Transmembrane Helix	205	223	0.94
Non-Cytoplasmic	224	230	0.66
Transmembrane Helix	231	250	0.94
Cytoplasmic	251	258	0.90