YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88600114, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLIHKNKPS NHENKLIYAI FIIIITMVVE VVGGIISNSL ALLSDAGHMF TDFISLLLSW  60
   61 LAYKVAMKKS DSCRSYGYHR FQVVAAFING LTLFGIAILI ILESIKRFFS PEEVCWEIMM 120
  121 SVAILGLIAN VVSFFLLYRK NESNLNLKSA VLHVVGDLLG SVAAIVASVV IMFTSWQIVD 180
  181 PLLSVFVSII ILGGAYRIIK NSGHILLEGT PDNIDPDKIR KTVSENIAEV LDIHHIHIWS 240
  241 LTTDHPIMTM HVKLDKAAVT DNLKYSQVLV SIKKLLSRDF GIIHVTIEAE YDNCADDSVM 300
  301 IKTAHN

Type	Start	End	Confidence
Cytoplasmic	1	15	0.98
Transmembrane Helix	16	37	0.93
Non-Cytoplasmic	38	45	0.74
Transmembrane Helix	46	67	0.86
Cytoplasmic	68	80	0.92
Transmembrane Helix	81	102	0.91
Non-Cytoplasmic	103	117	0.83
Transmembrane Helix	118	138	0.95
Cytoplasmic	139	149	0.93
Transmembrane Helix	150	173	0.89
Non-Cytoplasmic	174	177	0.80
Transmembrane Helix	178	199	0.87
Cytoplasmic	200	306	0.98