YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74223844
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSDDTTCK RYIKMITNIV ILSLIICISL AFWIMSMTAS TYYGNFRPVS PWRWLFSVVV  60
   61 PVVIACNGFK KKSLDHSGAL GGLVVGFILT IANFSFFTSL MTFFLSSSKL TKWRGNIKKQ 120
  121 LDSEYKEGGQ RNWVQVFCNG AVPTELALLY MIENGPGEMP IDFSKQHTAS WMCLSLLAAL 180
  181 AGSAGDTWAS EVAPVLSKSS PRLITTWEKV PVGTNGGVTA VGLASSLLGG TFVGLAYFLT 240
  241 QLVFVNDLDI SAPQWPIIAF GGVAGLFGSL VDSFLGATMQ FSGLDERTGL VVSSPTQETK 300
  301 HIAGKPILDN NAVNLFSSVL VALLLPTAAS GFWPRE

Type	Start	End	Confidence
Cytoplasmic	1	15	0.93
Transmembrane Helix	16	37	0.88
Non-Cytoplasmic	38	50	0.78
Transmembrane Helix	51	69	0.78
Cytoplasmic	70	78	0.68
Transmembrane Helix	79	101	0.87
Non-Cytoplasmic	102	167	0.66
Transmembrane Helix	168	190	0.81
Cytoplasmic	191	211	0.51
Transmembrane Helix	212	239	0.77
Non-Cytoplasmic	240	254	0.50
Transmembrane Helix	255	277	0.87
Cytoplasmic	278	311	0.53
Transmembrane Helix	312	333	0.85
Non-Cytoplasmic	334	336	0.47