YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71905515, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVPKGFFEK LWSFVSFLPY FFLLLLLGVT KALIIGPISS AIILVGNSCV IIGLWPAHFI  60
   61 WTYYCLARTK RIGLVLKTLA LVLFPLPLLL WPVAGIVGSL FGGIAYGFFT PLMATFEAVG 120
  121 ESVTSKCYHC FVDGSFSTIK GSCTVVTDFT DFCFHSYFSY MDELREMVSA DVEPLEIKLS 180
  181 RLPSCLLASL IGVMVDVLLI TAVAVYKSPY MLLKGWKRLL EDLVGREGPF LESVCVPFAG 240
  241 LAILLWPLAV AGAVIASVLS SFFLGLYSGV IVHQEDSFRM GLNYIIAAVS LFDEYVNDLL 300
  301 YLREGTSLPR PCYRTKTETV HGKRILGESK NVDLKSKRSS SLGSKLVSEQ SRTLKKAITL 360
  361 YKPVQVWEWL FKSCEVNGRI LLRDGLIDVK DVEECLVKGN SKKLYIKLPA WTVLQCLLAS 420
  421 AKSNSSGLVI TDGVELTELN SPRDKVFVWL VGPLLIMKEQ IKNLKLTEDE EFCLRKLVMV 480
  481 CKNERTEDWD NTGFPSSDTV RKAQLQAIIR RLQGMVASMS RIPTFRRRFM NLVKVLYIEA 540
  541 LEMGASGNRA GGILKPNSDQ TGNLDRTETP DMDVV

Type	Start	End	Confidence
Cytoplasmic	1	10	0.93
Transmembrane Helix	11	35	0.86
Non-Cytoplasmic	36	40	0.76
Transmembrane Helix	41	62	0.92
Cytoplasmic	63	73	0.77
Transmembrane Helix	74	94	0.76
Non-Cytoplasmic	95	95	0.29
Transmembrane Helix	96	119	0.60
Cytoplasmic	120	184	0.48
Transmembrane Helix	185	206	0.92
Non-Cytoplasmic	207	237	0.49
Transmembrane Helix	238	271	0.74
Cytoplasmic	272	575	0.52