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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|71912406
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.78
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRKRYVWLK SILVAILVLG SGVWINTSNG TNAQAATITQ DTPINQIFTD TALAEKMKTV  60
   61 LGKTNVTDTV SQTDLDQVTT LQADRLGIKS IDGLEYLNNL TQINFSNNQL TDITPLKDLT 120
  121 KLVDILMNNN QIADITPLAN LSNLTGLTLF NNQITDIDPL KNLTNLNRLE LSSNTISDIS 180
  181 ALSGLTNLQQ LSFGNQVTDL KPLANLTTLE RLDISSNKVS DISVLAKLTN LESLIATNNQ 240
  241 ISDITPLGIL TNLDELSLNG NQLKDIGTLA SLTNLTDLDL ANNQISNLAP LSGLTKLTEL 300
  301 KLGANQISNI SPLAGLTALT SLELNENQLE DISPISNLKN LTYLTLYFNN ISDISPVSSL 360
  361 TKLQRLFFYN NKVSDVSSLA SLTNINWLSA GHNQISDLTP LANLTRITQL GLNDQAWTNA 420
  421 PVNYKANVSI PNTVKNVTGA LIAPATISDG GSYAEPDITW NLPSYTNEVS YTFNQSVTIG 480
  481 KGTTTFSGTV TQPLKAIFNA KFHVDGKETT KEVEAGNLLT EPAKPVKEGY TFVGWFDAQT 540
  541 GGTKWNFSTD KMPTNDIDLY AQFSINSYTA TFDNDGVTTS QTVDYQGLLQ EPTAPTKEGY 600
  601 TFKGWYDAKT GGDKWDFATS KMPAKNITLY AQYSANSYTA TFDVDGKTTT QAVDYQGLLK 660
  661 EPKTPTKAGY TFKGWYDEKT DGKKWDFATD KMPANDITLY AQFTKNPVAP PTTGGNTPPT 720
  721 TNNGGNTTSP SANIPGSNTS NTSTGNSAST TSTMNAYDPY NSKEASLPTT GDSDNALYLL 780
  781 IGLLAVGTAV ALTKKARASK 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle