YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73946077
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSVGAPRS PSTLILFGVA ACHKSRVHST ASQARAAPVL FQMHHADAIS AAAQAHVSRT  60
   61 LVYKPPVQSS QAAVSHHEQN DGDDERADVT APGRRRPAPT RRPAARPLGN MALVPCQVLR 120
  121 VAILLSYCSI LCNYKAIEMP SHQTYGGSWK FLTFIDLCLR LKAWLPPQQH LPTTGYQVIQ 180
  181 AVFFGICVLT DLSSLLTRGS GNQEQERQLK KLISLRDWML AVLAFPVGVF VVAVFWIIYA 240
  241 YDREMIYPKL LDNFIPGWLN HGMHTTVLPF ILIEMRTSHH AYPSRSSGLA AICTFSVGYI 300
  301 LWVCWIHHVT GMWVYPFLEH IGPGARIVFF GSTTILMNFL YLLGEVLNSY IWDTQRSMEE 360
  361 EKEKPKLE

Type	Start	End	Confidence
Cytoplasmic	1	110	0.53
Transmembrane Helix	111	125	0.39
Non-Cytoplasmic	126	175	0.82
Transmembrane Helix	176	197	0.87
Cytoplasmic	198	217	0.91
Transmembrane Helix	218	240	0.94
Non-Cytoplasmic	241	256	0.89
Transmembrane Helix	257	275	0.88
Cytoplasmic	276	287	0.78
Transmembrane Helix	288	309	0.92
Non-Cytoplasmic	310	326	0.82
Transmembrane Helix	327	347	0.87
Cytoplasmic	348	368	0.90