YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73947763
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPAGLAAAG TPRQPSKRRI PVSQPGMADP HQLFDDTSSA QSRGYGAQRA PSGLGYPAAS  60
   61 ASPQAAFLAD PVSNMAMAYG SSLAAQGKEL VDKNIDRFIP VTKLKYYFAV DTMYVGKKLG 120
  121 LLFFPYLHQD WEVQYQQDTP VAPRFDVNAP DLYIPAMAFI TYVLVAGLAL GTQDRFSPDL 180
  181 LGLQASSALA WLTLEVLAIL LSLYLVTVNT DLTTIDLVAF LGYKYVGMIG GVLMGLLFGK 240
  241 IGYYVVLGWC CVSIFVFMIR TLRLKILAEA AAEGVPVRGA RNQLRMYLTM AVAAAQPLLM 300
  301 YWLTFHLVR

Type	Start	End	Confidence
Cytoplasmic	1	151	0.91
Transmembrane Helix	152	172	0.91
Non-Cytoplasmic	173	186	0.79
Transmembrane Helix	187	208	0.90
Cytoplasmic	209	216	0.75
Transmembrane Helix	217	238	0.81
Non-Cytoplasmic	239	244	0.65
Transmembrane Helix	245	264	0.93
Cytoplasmic	265	283	0.96
Transmembrane Helix	284	305	0.91
Non-Cytoplasmic	306	309	0.85