YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57043249
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.84
Transmembrane Helix	15	33	0.90
Non-Cytoplasmic	34	84	0.90
Transmembrane Helix	85	102	0.92
Cytoplasmic	103	114	0.78
Transmembrane Helix	115	135	0.91
Non-Cytoplasmic	136	150	0.77
Transmembrane Helix	151	178	0.75
Cytoplasmic	179	192	0.72
Transmembrane Helix	193	215	0.74
Non-Cytoplasmic	216	233	0.63
Transmembrane Helix	234	258	0.85
Cytoplasmic	259	324	0.67
Transmembrane Helix	325	347	0.81
Non-Cytoplasmic	348	378	0.66
Transmembrane Helix	379	402	0.83
Cytoplasmic	403	469	0.75
Transmembrane Helix	470	490	0.79
Non-Cytoplasmic	491	493	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSLDQSRKE VLRFAVSCRV LTLVLQALFN AIIPDHRAEA FSPPHLTPSG VVDQLVEGLL  60
   61 GGLSHWDAEH FLFIAEHGYL YEHNFAFFPG FPLALLVGAE LLRPLRALLN LRSRLLISVA 120
  121 LLNSLFSVLA TVALHDLGCL VLRCPRQAFY GALLFCLSPA NVFLAAGYSE ALFALLTFSA 180
  181 MGQLERGRSW TSGLLFALAT GVRSNGLVNI GFLVYSQCQG FLSSLMVLNP LRQLLMLMGS 240
  241 VFLSLFTLGL PFALFQYYAY TQFCLPGSAR PIPKPLLQLA VDKGYRTVEG NEPPWCSWKL 300
  301 PLIYSYIQDL YWNVGFLRYY EFKQVPNFLL AAPVAILVAW ATWTYVTTHP WLCLTLGMRR 360
  361 SKNSKTREKS HPGFLSPRVF VYLVHAAALL LFGVVYMHVQ VLTRFLGSST PIVYWFPAYL 420
  421 LQNQEPLLRS PETVPWKPLA GESVARQKVP RNSLVGLLYN WKACSLVTRC ILSYFLSYWL 480
  481 LGLLLHCNFL PWT