YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73958296
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTGRVRSGG PGEERSEMAG GANLEAQLCS EQFGSGAARG CLAAADGSLQ WEAWEWRWWG  60
   61 LSGPCPGRAR GRDGGGGGTP GTASPRLSRL LVVFLPQGFP DSVSPDYLPY QLWDSVQAFA 120
  121 SSLSGSLATH AVLLGIGVGN AEASVSAATA TWLVKDSTGM LGRIIFAWWK GSKLDCNAKQ 180
  181 WRLFADILND VAMFLEIMAP IYPIFFTMTV CISNLAKCIV SVAGGATRAA LTMHQARRNN 240
  241 MADVSAKDSS QETLVNLAGL LVSLLMLPLV SACPSFSLSC FFFLTALHIY ANYRAVRALV 300
  301 LETLNEDRLR LVLKHFLQRG EVLDPTSANQ MEPLWTGFWP SLSLSLGVPL HRLISSVFEL 360
  361 QQLVEGHQEP YLLHWDKSKS QVQVVLSQKA GPETILRAAT HGLVLEALQG DGPLPRELEE 420
  421 LRNRVLAGAD KESWVIIKET HQVLDKLFPK FLKGLQDAGW KTEKHQLEVD EWRATWLPSP 480
  481 EKKIL

Type	Start	End	Confidence
Cytoplasmic	1	126	0.78
Transmembrane Helix	127	153	0.48
Non-Cytoplasmic	154	197	0.38
Transmembrane Helix	198	232	0.59
Cytoplasmic	233	253	0.55
Transmembrane Helix	254	287	0.68
Non-Cytoplasmic	288	334	0.49
Transmembrane Helix	335	354	0.45
Cytoplasmic	355	485	0.52