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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|73959349
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGRRKRNVN TAPQFQPPSY QATVPENQPA GTPVASLRAI DPDEGEAGRL EYTMDALFDS  60
   61 RSKQFFSLDP ITGAVTTAEE LDRETKSTHV FRVTAQDHGM PRRSALATLT ILVTDTNDHD 120
  121 PVFEQQEYKE SLRENLEVGY EVLTVRATDG DAPPNANILY RLLEGPGGSP SEIFEIDPRS 180
  181 GVIRTRGPVD REEVESYQLT VEASDQGRDP GPRSATAAVF LSVEDDNDNA PQFSEKRYVV 240
  241 QVREDVTPGA PVLRVTASDR DKGSNALVHY SIMSGNARGQ FYLDAQTGAL DVVSPLDYET 300
  301 TKEYTLRVRA QDGGRPPLSN VSGLVTVQVL DINDNAPIFV STPFQATVLE SVPLGYLVLH 360
  361 VQAIDADAGD NARLEYRLAG VGHDFPFAIN NGTGWISVAA ELDREEYTVR LNEDAAVGTS 420
  421 VVTVSAVDRD AHSVITYQIT SGNTRNRFSI TSQSGGGLVS LALPLDYKLE RQYVLAVTAS 480
  481 DGTRQDTAQV VVNVTDANTH RPVFQSSHYT VNVNEDRPAG TTVVLISATD EDTGENARIT 540
  541 YFMEDSIPQF RIDADTGAVT TQAELDYEDQ VSYTLAITAR DNGIPQKSDT TYLEILVNDV 600
  601 NDNAPQFLRD SYQGSVYEDV PPFTSVLQIS ATDRDSGLNG RVFYTFQGGD DGDGDFIVES 660
  661 TSGIVRTLRR LDRENVAQYI LRAYAVDKGM PPARTPMEVT VTVLDVNDNP PVFEQDEFDV 720
  721 FVEENSPIGL AVARVTATDP DEGTNAQIMY QIVEGNIPEV FQLDIFSGEL TALVDLDYED 780
  781 RPEYILVIQA TSAPLVSRAT VHVRLLDRND NPPVLGNFEI LFNNYVTNRS SSFPGGAIGR 840
  841 VPAHDPDVSD SLTYSFERGN ELSLVLLNAS TGELRLSRAL DNNRPLEAIM SVLVSDGVHS 900
  901 VTAQCALRVT IITDEMLTHS ITLRLEDMSP ERFLSPLLGL FIQAVAATLA TPPDHVVVFN 960
  961 VQRDTDAPGG HILNVSLSVG RPPGPGGGPP FLPSEDLQER LYLNRSLLAA ISAQRVLPFD1020
 1021 DNICLREPCE NYMRCVSVLR FDSSAPFIAS SSVLFRPIHP VGGLRCRCPP GFTGDYCETE1080
 1081 VDLCYSRPCG PHGRCRSREG GYTCLCRDGY TGEHCEVSAR SGRCTPGVCK NGGTCVNLLV1140
 1141 GGFKCDCPSG DFEKPYCQVT TRSFPAHSFI TFRGLRQRFH FTLALSFATK ERDGLLLYNG1200
 1201 RFNEKHDFVA LEVIQEQVQL TFSAGESTTT VSPFVPGGVS DGQWHTVQLK YYNKPLLGQT1260
 1261 GLPQGPSEQK VAVVTVDGCD TGVALRFGAV LGNYSCAAQG TQGGSKKSLD LTGPLLLGGV1320
 1321 PDLPESFPVR TRHFVGCMRN LQVDSRHVDM ADFVANNGTV PGCPAKKNVC DSSTCNNGGT1380
 1381 CVNQWDAFSC ECPLGFGGKS CAQEMANPQR FLGSSLVAWH GLSLPISQPW HLSLMFRTRQ1440
 1441 ANGVLLQAVT RGRSTITLQL REGHVVLSVE GTGLQASSLQ LEPGRANDGD WHHAQLALGA1500
 1501 SGGPGHAILS FDYGQQRAEG NLGPRLHGLH LSNITVGGVP GPASGVARGF RGCLQGVRVS1560
 1561 ETSEGVSSLD PSRGESVNVE PGCSLPDPCD SNPCPANSYC SDDWDSYSCS CDPGYYGDNC1620
 1621 TNVCDLNPCE HQSVCIRKPS APHGYTCECP QNYLGPYCET RIDQPCPRGW WGHPTCGPCN1680
 1681 CDVSKGFDPD CNKTSGECHC KENHYRPPGS PTCLLCDCYP TGSLSRVCDP EDGQCPCKPG1740
 1741 VIGRQCDRCD NPFAEVTTNG CEVNYDSCPR AIEAGIWWPR TRFGLPAAAP CPRGSFGTAV1800
 1801 RHCDEHRGWL PPNLFNCTSV TFSELKGFAE RLQRNESGLD SGRSQRLALL LRNATQHTAG1860
 1861 YFGSDVKVAY QLATRLLAHE SAQRGFGLSA TQDVHFTENL LRVGSALLDA ANKRHWELIQ1920
 1921 QTEGGTAWLL QHYEAYASAL AQNMRHTYLN PFTIVTPNIV ISVVRLDKGN FAGAKLPRYE1980
 1981 ALRGERPPDL ETTVILPDSV FRETPTVVRP AGPGEPQESE ELARRQRRHP ELSQGEAVAS2040
 2041 VIIYRTLAGL LPHNYDPDKR SLRVPKRPVI NTPVVSISVH DDEELLPRAL DKPVTVQFRL2100
 2101 LETEERTKPI CVFWNHSILV SGTGGWSARG CEVVFRNESH VSCQCNHMTS FAVLMDVSRR2160
 2161 ENGEILPLKT LTYVALGVTL AALLLSFLFL TILRALRSNQ HGIRRNLTAA LGLAQLVFLL2220
 2221 GINQADLPFA CTVIAILLHF LYLCTFSWGL LEALHLYRAL TEVRDVNAGP MRFYYMLGWG2280
 2281 VPAFITGLAV GLDPEGYGNP DFCWLSIYDT LIWSFAGPVA FAVSMSVFLY ILAARASCAA2340
 2341 QRQGFEKKGP VSGLRPSFAV FLLLSATWLL ALLSVNSDTL LFHYLFAACN CVQGPFIFLS2400
 2401 YVVLSKEVRK ALKFACSRKP SPDPALTTKS TLTSSYNCPS PYADGRLYQP YGDSAGSLHS2460
 2461 ASRSGKSQPS YIPFLLREES TLNPGQGPPG LGDPGSLFLE GQDQQHDPDT DSDSDLSLED2520
 2521 DQSGSYASTH SSDSEEEEEE EEEEAVFPGE PGWDSLLGPG AERLPLHSTP KDGGSGPGKA2580
 2581 PWPGDFGTTA KESSGNGASE ERPWENGDAL PREGSLGPLP GPSAQPHKGI LKKKCLPTIS2640
 2641 EKSSLLRLPL EQGTGSSRGS SASEGSRGGP PPRPPPRQSL QEQLNGVMPI AMSIKAGTVD2700
 2701 EDSSGSEFLF FNFLH

YRC Informatics Platform - Version 3.0
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