YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73959688
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLRAWWTL AGPGQPECGS SAVRKAWRAT RAPGGPQDSG ARQVYLRVQG ERTRRACARP  60
   61 ARPAAAAMEP LFPAPTLAGW NASSAAPGGG GDNGTQAGLA PSPGARAVVV PVLYLLVCAA 120
  121 GLGGNALVIY VVLRHAKMKT VTNIYILNLA VADVLLMLGL PFLATQNAVS YWPFGPVLCR 180
  181 LVMTLDGINQ FTSIFCLTVM SVDRYLAVVH PIRSTRWRRP RVAKLASAAV WAFSLLMSLP 240
  241 LVVFADIQEG WNTCNLSWPE PVGLWGAVFI IYTSVLGFFG PLLVICLCYL LIVVKVKASG 300
  301 VRVGATRRRS ERKVTRMVVV VVVVFVGCWL PFFIVNIVNL AFVLPEEPAS AGAYFFVVIL 360
  361 SYANSCANPV LYGFLSDNFR QSFRKVLCLR KGYGAEDAEA TEPQPDKSSR LQEAMLPARG 420
  421 SEANGLMQTS RL

Type	Start	End	Confidence
Cytoplasmic	1	63	0.86
Transmembrane Helix	64	83	0.74
Non-Cytoplasmic	84	109	0.86
Transmembrane Helix	110	133	0.91
Cytoplasmic	134	143	0.88
Transmembrane Helix	144	165	0.94
Non-Cytoplasmic	166	186	0.88
Transmembrane Helix	187	208	0.85
Cytoplasmic	209	224	0.89
Transmembrane Helix	225	245	0.91
Non-Cytoplasmic	246	267	0.87
Transmembrane Helix	268	293	0.94
Cytoplasmic	294	313	0.95
Transmembrane Helix	314	335	0.93
Non-Cytoplasmic	336	351	0.85
Transmembrane Helix	352	375	0.91
Cytoplasmic	376	432	0.98