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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|73961936
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAERGEDAA GEKSEAGRGW VMRFEERSHR HDIKVQSGAA SADGEAAASD PETLAKIINK  60
   61 GAYTEQWIFN VDETAFCWKK MPSWPFTARE EKSMPGFKAP EDRLALFLGA NAADDLQLYK 120
  121 TSVEEVPADV VEIARELELG VETEDVTELP QAHDRVFTDE GLLLVDEHRE WFLKMESTPG 180
  181 EHAKDLDYYI TLFGTKLAIS PRQKAKRLGV QHSGTLHQAC RSYVPPGTPG LIMVEAEHLS 240
  241 ARGCWTVFTN FLCSRKGTLL CAEMILCLVI LIWFSLSTPA YSSLSVVEMI LAEIFFVIYM 300
  301 CDLASKIQYW SWIDFFRTLI AATLYLITSI VVLVEGGNRS IIIAGVLGLI AVFLFGYDAF 360
  361 ITYPSSHLEI LHQPQRPTVH SSKGRKSVKE TPPRSTTGSW TQCLETSSQA IVIEHCQGPF 420
  421 YSESWLSLPR LALSRAGDAA PPRSSRISSR RDPSLVFLRR PLSSLSSPKS PSGADLALPR 480
  481 RTARQQPQQR RSWQGRIRAS GRAEESRGCG ARPPTAPLSG AGRAPWPKRR QQLAQLRTRP 540
  541 SLSPFLFSLP CCRRSLHPAA LSLPPPAHFG TGNSPWRRRL GPARLKRQPE QRGWWRRRCR 600
  601 LSLRGCRVGC DFGRRSGCGS PLPPARGLGS GDPLSEGEEG EPGAPGDPEV PASPPRGREP 660
  661 TAGGSCSSNM STGDSFEARF EKIDNLLRDP KSEVNSDCLL DGLDALVYDL DFPALRKNKN 720
  721 IDNFLSRYKD TINKIRDLRM KAEDYEVVKV IGRGAFGEVQ LVRHKSTRKV YAMKLLSKFE 780
  781 MIKRSDSAFF WEERDIMAFA NSPWVVQLFY AFQDDRYLYM VMEYMPGGDL VNLMSNYDVP 840
  841 EKWARFYTAE VVLALDAIHS MGFIHRDVKP DNMLLDKSGH LKLADFGTCM KMNKEGMVRC 900
  901 DTAVGTPDYI SPEVLKSQGG DGYYGRECDW WSVGVFLYEM LVGDTPFYAD SLVGTYSKIM 960
  961 NHKNSLTFPD DNDISKEAKN LICAFLTDRE VRLGRNGVEE IKRHLFFKND QWAWETLRDT1020
 1021 VAPVVPDLSS DIDTSNFDDL EEDKGDEETF PIPKAFVGNQ LPFVGFTYYS NRRYLSSANP1080
 1081 NDNRSSPNVD KSLQENLQKT IYKLEEQLHN EMQLKDEMEQ KCRTSNIKLD KIMKELDEEG1140
 1141 NQRRNLESTV SQIEKEKMLL QHRINEYQRK AEQENEKRRN VEHEVSTLKD QLEDLKKVNQ1200
 1201 NSQLANEKLA QLQKQLEEAN DLLRTESDTA VRLRKSHTEM SKSVSQLESL NRELQERNRI1260
 1261 LENSKTQMDK DYYQLQAVLE AERRDRGHDS EMIGDLQARI TSLQEEVKHL KHNLERVEGE1320
 1321 RKEAQDLLNH SEKEKNNLEI DLNYKLKSLQ QRLEQEVNEH KVTKARLTDK HQSIEEAKSV1380
 1381 AMCEMEKKLK EEREAREKAE NRVVQIEKQC SMLDVDLKQS QQKLEHLTEN KERMEDEVKN1440
 1441 LSLQLEQESN KRLLLQNELK TQAFEADNLK GLEKQMKQEI NTLLEAKRLL EFELAQLTKQ1500
 1501 YRGNEGQMRE LQDQLEAEQY FSTLYKTQVK ELKEEIEEKN RENLKKIQEL QNEKETLATQ1560
 1561 LDLAETKAES EQLARGLLEE QYFELTQESK KAASRNRQEI TDKDHTVSRL EESNSMLTKD1620
 1621 NELLRKENEE LTDKMKRAEE EYKLKKEEEI NNLKAAFEKN INTERTLKTQ AVNKLAEIMN1680
 1681 RKDFKIDRKK ANTQDLRKKE KENRKLQLEL NQEREKFNQM VVKHQKELND MQAQLVEECT1740
 1741 HKNELQMQLA SKESDIEQLR AKLLDLSDST SIASFPSADE TDGNLPESRI EGWLSIPNRG1800
 1801 NIKRYGWKKQ YVVVSSKKIL FYNDEQDKEQ SNPSMVLDID KLFHVRPVTQ GDVYRAETEE1860
 1861 IPKIFQILYA NEGECRKDVE MEPVQQAEKT NFQNHKGHEF IPTLYHFPAN CEACAKPLWH1920
 1921 VFKPPPALEC RRCHVKCHRD HLDKKEDLIS PCKVSYDVTS ARDMLLLACS QDEQKKWVTH1980
 1981 LVKKIPKNPP SGFVRASPRT LSTRSTANQS FRKVVKNTSG KTRLL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle