YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68445388
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	179	0.91
Transmembrane Helix	180	202	0.82
Non-Cytoplasmic	203	325	0.95
Transmembrane Helix	326	350	0.81
Cytoplasmic	351	356	0.72
Transmembrane Helix	357	375	0.93
Non-Cytoplasmic	376	391	0.84
Transmembrane Helix	392	414	0.89
Cytoplasmic	415	425	0.82
Transmembrane Helix	426	444	0.97
Non-Cytoplasmic	445	513	0.94
Transmembrane Helix	514	536	0.90
Cytoplasmic	537	624	0.99
Transmembrane Helix	625	646	0.91
Non-Cytoplasmic	647	653	0.69
Transmembrane Helix	654	672	0.91
Cytoplasmic	673	682	0.81
Transmembrane Helix	683	705	0.89
Non-Cytoplasmic	706	724	0.94
Transmembrane Helix	725	748	0.83
Cytoplasmic	749	769	0.76
Transmembrane Helix	770	793	0.79
Non-Cytoplasmic	794	815	0.71
Transmembrane Helix	816	839	0.90
Cytoplasmic	840	842	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLENKDIRL ASAMLEVELH QTSALSVPTC PDPGRPLTVK PTASNYELGQ ADPCIPHAGE  60
   61 AAGKSPCVPE HAEFGSFLMK GRTHSPLSQF SSSLKDLSFK EDTPLLWNSP QKKRSQFMPV 120
  121 HHPEFIATED SWESGLTVWE QKCMLGKEVA DLSALASSEK GDLAGGVHLR AQVSKLGCCV 180
  181 RWMKITGLFV FVVLCSILFS LYPDQGKLWQ LLAVSPLENY SVTLSGRADS IILQLDLAGA 240
  241 LMPGGPSGSG KEEHVMVVVT QTDAVGNRWR RPQQVTHNWT VPLNPRSEHV VVSRTFEIVS 300
  301 REAVSISIQA SLQQTRLVPL LLAHQFLGAS VEAQVASAVA ILTGVYTLII FEIVHRTLAA 360
  361 MLGALAALAA LAVVGDRPSL THVVEWIDFE TLALLFGMMI LVAIFSETGF FDYCAVKAYQ 420
  421 LSRGRVWAMI IMLCLMAAIL SAFLDNVTTM LLFTPVTIRL CEVLNLDPRQ VLIAEVIFTN 480
  481 IGGAATAIGD PPNVIIVSNQ ELRKMGLDFA GFTAHMFLGI CLVLLVSFPL LRLLYWNKKL 540
  541 YNKEPSEIVE LKHEIHVWRL TAQRISPASR EETAVRGLLL EKVLALEHLL AQRLHTFHRQ 600
  601 ISQEDKNWET NIQELQRKHR ISDRSLLVKC LTVLGFVISM FFLNSFVPGI HLDLGWIAIL 660
  661 GAIWLLILAD IHDFEIILHR VEWATLLFFA ALFVLMEALT HLHLVEYVGE QTALLIKMVP 720
  721 EDQRFAAAIV LIVWVSALAS SLIDNIPFTA TMIPVLLNLS QDPEISLPAL PLMYALALGA 780
  781 CLGGNGTLIG ASANVVCAGI AEQHGYGFSF MEFFRLGFPM MLMSCTIGMC YLLIAHVVVG 840
  841 WN