YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220693543, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLTKEEED AHYRAVLKGG TIGTVLGLIG GYAGVLAASR RYHTIRNLTL PMKAFLVTSS  60
   61 GTFVGIIAAD NSSRNFEVER NADQQWYQNR EQRLREESLQ GMSFMERSLA WARKEKYTIV 120
  121 TATWVASMIG SFVLVGRNPY LSGQQKIVQA RVYAQGLTLA VLVASAAFEI SDQRKGKGIL 180
  181 KKKLEEKEAA DGKSGVVVEE EPVRHQQNEG QGDLWKDMVA AEEERLKKKH QSVWEHPELH 240
  241 KEGQQQQQQQ AKEVKEEKTQ Q

Type	Start	End	Confidence
Cytoplasmic	1	15	0.79
Transmembrane Helix	16	38	0.84
Non-Cytoplasmic	39	49	0.66
Transmembrane Helix	50	69	0.77
Cytoplasmic	70	116	0.89
Transmembrane Helix	117	136	0.90
Non-Cytoplasmic	137	151	0.79
Transmembrane Helix	152	171	0.70
Cytoplasmic	172	261	0.75