YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AT221_ASPOR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.93
Transmembrane Helix	28	50	0.87
Non-Cytoplasmic	51	118	0.94
Transmembrane Helix	119	140	0.90
Cytoplasmic	141	149	0.84
Transmembrane Helix	150	170	0.94
Non-Cytoplasmic	171	177	0.73
Transmembrane Helix	178	203	0.86
Cytoplasmic	204	278	0.97
Transmembrane Helix	279	299	0.95
Non-Cytoplasmic	300	306	0.76
Transmembrane Helix	307	328	0.91
Cytoplasmic	329	374	0.95
Transmembrane Helix	375	397	0.92
Non-Cytoplasmic	398	405	0.88
Transmembrane Helix	406	429	0.90
Cytoplasmic	430	439	0.86
Transmembrane Helix	440	463	0.88
Non-Cytoplasmic	464	477	0.91
Transmembrane Helix	478	500	0.86
Cytoplasmic	501	510	0.88
Transmembrane Helix	511	533	0.82
Non-Cytoplasmic	534	541	0.76
Transmembrane Helix	542	561	0.94
Cytoplasmic	562	606	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREDEGLSPP QYPGDDTRPT SRKELAGWYS YSWAAEVFTV CAMGSFLPIT LEQMARDRGV  60
   61 LLSDKVTPCQ ATWKAPKQLS PHETLSQTLI NALRYGRDVP GASQCVVYIF GVEVNTASFA 120
  121 MYTFSVSVLV QAVLIISMSG AADHGTYRKV FLLTFALVGS ISTMSFLSVV PKLYLLGALF 180
  181 AIIANTCFGA SFVLLNSFLP LLVRYHPSLL RGRNEISRQG AMGDDTWGNT SHDVNNVTTP 240
  241 LLRSAQVDNG TITENAARVS LADTSLELEL STRISSYGIG IGYIGAVLLQ IVCILVVIST 300
  301 HQTTFSLRLV LFVIGLWWFV FTIPAALWLR PRPGPPLSCA QDGKQHSWPG YIIHAWKSLG 360
  361 RTVIRTRRLK DIMLFLASWF LLSDGIATVS GTAVLFAKTQ LGMQPAALGM INVVAMLAGV 420
  421 FGAFSWSYIS RLLNLRASQT IIACIILFEL VPLYGLLGFI PAIRDLGFLG LQQPWEMFPL 480
  481 SIVYGLVMGG LSSYCRSFFG ELIPPGYEAA FYALYAITDK GSSIFGPAVV GIVTDRYGEI 540
  541 RPAFVFLAIL ILLPLPLMLL VDVDRGKRDA LALSAELEGS QELNAPTYGA VPCNRNDSES 600
  601 AVVQSE