YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169770215
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.68
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.67
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	69	0.95
Transmembrane Helix	70	91	0.94
Cytoplasmic	92	99	0.79
Transmembrane Helix	100	120	0.90
Non-Cytoplasmic	121	137	0.85
Transmembrane Helix	138	158	0.93
Cytoplasmic	159	277	0.95
Transmembrane Helix	278	302	0.82
Non-Cytoplasmic	303	319	0.70
Transmembrane Helix	320	342	0.83
Cytoplasmic	343	363	0.69
Transmembrane Helix	364	380	0.75
Non-Cytoplasmic	381	394	0.77
Transmembrane Helix	395	414	0.92
Cytoplasmic	415	451	0.92
Transmembrane Helix	452	473	0.82
Non-Cytoplasmic	474	485	0.77
Transmembrane Helix	486	505	0.87
Cytoplasmic	506	520	0.75
Transmembrane Helix	521	538	0.95
Non-Cytoplasmic	539	552	0.81
Transmembrane Helix	553	576	0.90
Cytoplasmic	577	596	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWQKASHAAI AAASLFASLA SAIPHGDDHA MNMDMGMGMN STQKQPESHA AASDDSPMSY  60
   61 FAYGKHSSTI IAHIGLMVLA WCFILPVAVM FSVARSRFAL PSQFLFLVFN ALGLLLGIIY 120
  121 NSQTPDLYEN NAHHKIGWIA TWVISAQVIM SLIFAYAGRG ESDATSYERA AFLPVSTDEM 180
  181 AETPTHPTGI HHEYRWSRDS GQDTEVNSAS LHSRPSSSTC ASPSEEYDTF VKPEAQYPEQ 240
  241 PAQSRGWLHS TFVNRFLASR VPCMVSSRAL RILTIFYLVI DRIILPFGFI AIATGAVTYG 300
  301 GIMRGREIFN GLAHFIKGGI FFWYGLLTLG RFMGCWADLG WAWNVKPSSD IVGKWKAKIP 360
  361 TGEFTESFVI FLYGASNMFL EHLTSWGGKW SATDLEHVSI SIMFFGGGLC GMLFESKRVK 420
  421 SWLNSTVVQY PSNLRRHGPS DTAWQLPDTQ GVSLNPMPAL VILLLGSMMG SHHQSSMVST 480
  481 MVHKQWGNLL VGFSFARCMT YVITYLKPPT SYLPSRPPTE IVAAFCLISG GLIFMLSTRN 540
  541 VVDAMEFYEL DAMFIFTVAM GVTAFIMACE ILAIAIKAWA TKKETRPQLP PFQFPA