YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238486262, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASASLDHLV KGSPAPANHL SSSSTSSDTL NSAPRPYPQN SSDPSSPPRP LTPDPLSTLP  60
   61 SSPPQIYLNL LILESSLRAQ YLALRERRRQ NTFFLLLLAA WITYFAYALF LRPREDGRGV 120
  121 GGSVYWVVEM WEKVALLGGV VTALLVWGTG QWERGVRWPR RWLAVANRGL RTMNTKIVVI 180
  181 RGPWWQELLS YLSFLFPFSI PLFPSPVGEF HYIERSASEK RAGGRQHHQP YYNMDMESGL 240
  241 VEEDLSPGGD YIRLLLLPKS FSPEFRGNWD DYRTEFWEKE NERRAQLRQK LRQKERQLAQ 300
  301 QDGGWFWWFG IGWKASQRRR AAAATTTKSA DEKAHHRHSH HSSISRLSHE PKSPARRSTR 360
  361 SESHSRTPSR STTPVDTDDR PPSRSSASGR PRRGSLTPNS TASGSEQGHQ HRKKKSKTLS 420
  421 RGVSPLTQAQ ISEGVRTSSF SSDDSGFLAE SDKVKDEQTS V

Type	Start	End	Confidence
Cytoplasmic	1	91	0.96
Transmembrane Helix	92	111	0.95
Non-Cytoplasmic	112	130	0.94
Transmembrane Helix	131	152	0.89
Cytoplasmic	153	187	0.83
Transmembrane Helix	188	203	0.71
Non-Cytoplasmic	204	461	0.84