YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169771537
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTPTFLSPN HNPEEDSTSD PLLLTIRFSA SIPDLPLDIL YPETTTSAGL KQLVRTRLPQ  60
   61 NLSSHRLRLI YAGRGLEDTV PLSVSLKLPP SPTRSPRLPS DDEDTDLSKG KGKGKAPVRE 120
  121 QPRLYIHCSI GDIVLSATDL ATEASLASTL QQEDETQKDG DQSSMQSQQQ QQQHQTSSTT 180
  181 PAPRGFDRLL SAGFTPAEVS ALRSQFMAIQ SVSRTPDTMP SGAELRELED RWMDEGSSAM 240
  241 AAGVGGAGEG AGFTDDDGGF GSGSRGAIDD MLWGAVMGFF WPVGCAMWLR REEGVWSWRK 300
  301 GLAVFVGVVV NLAFGTMRIM N

Type	Start	End	Confidence
Cytoplasmic	1	235	0.56
Transmembrane Helix	236	253	0.38
Non-Cytoplasmic	254	270	0.77
Transmembrane Helix	271	289	0.93
Cytoplasmic	290	297	0.74
Transmembrane Helix	298	319	0.86
Non-Cytoplasmic	320	321	0.72