YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83770983
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHTEAARTD SLGEQETRGD VESDKKAKNR RPANTAFRQQ RLKAWQPILT PRSVLPLFFV  60
   61 VGVIFAPIGG LLLWASSEVQ EIVIDYSECA DKAQRTPVPI PDKVQSSFKS SNQQPNPTWM 120
  121 KYRDEQTNET ICRLSFKIPE SIEPPVFMYY RLTNFYQNHR RYVKSLDIDQ LKGKPVDNKT 180
  181 IDGGSCDPLK LDDSGKAYYP CGLIANSMFN DTIKSPELLN DGNDDDPVVY VMTNKGIAWD 240
  241 SDKQLIKTTQ YKPGQVVPPP NWQARYPHNY TTEIPDLHDN EEFMVWMRTA ALPNFSKLSR 300
  301 RNDTTAMSPG TYQLDIADHF PVTEYGGTKS ILISSRTVIG GQNPFMGIAY VVVGGLCVLL 360
  361 GALFTIAHLV RPRKLGDHTY LTWNNEQESS AIATGRDNRF GPNTH

Type	Start	End	Confidence
Cytoplasmic	1	52	0.96
Transmembrane Helix	53	75	0.90
Non-Cytoplasmic	76	345	0.98
Transmembrane Helix	346	367	0.94
Cytoplasmic	368	405	0.96