YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57092051
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.78
Transmembrane Helix	12	36	0.82
Non-Cytoplasmic	37	72	0.70
Transmembrane Helix	73	93	0.87
Cytoplasmic	94	107	0.70
Transmembrane Helix	108	128	0.93
Non-Cytoplasmic	129	133	0.61
Transmembrane Helix	134	153	0.87
Cytoplasmic	154	162	0.61
Transmembrane Helix	163	183	0.85
Non-Cytoplasmic	184	189	0.51
Transmembrane Helix	190	207	0.70
Cytoplasmic	208	222	0.48
Transmembrane Helix	223	245	0.94
Non-Cytoplasmic	246	253	0.48
Transmembrane Helix	254	276	0.91
Cytoplasmic	277	295	0.52
Transmembrane Helix	296	315	0.94
Non-Cytoplasmic	316	355	0.51
Transmembrane Helix	356	377	0.89
Cytoplasmic	378	399	0.83
Transmembrane Helix	400	420	0.89
Non-Cytoplasmic	421	435	0.77
Transmembrane Helix	436	458	0.86
Cytoplasmic	459	472	0.71
Transmembrane Helix	473	491	0.93
Non-Cytoplasmic	492	498	0.62
Transmembrane Helix	499	521	0.74
Cytoplasmic	522	536	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTREHAPPVP GAPLSGSVLA EAAVVFAVVL SIHAAVWDRY SWCAVALAVQ AFYVQYKWDR  60
   61 LLQQGSAVFQ FRMSANSGLL PASMVMPLFG LVMKERCQSM GNPYFERFGI VVAATGMAVA 120
  121 LFSSVLALGI TRPVPTNTCV ISGLAGGVII YIMKHSLSVG EVIEVLEVLL IFVYLNMILL 180
  181 YLLPRCFTPG EALLVLGGIS FMLNQLIKRS LTVVESQGDP VDFFLLVVVV GMVLMGVFFS 240
  241 TLFVFMDSGT WASSIFFHLM TCVLGLGVVL PWLHRLIRKN PLLWLLQFLF QKETRIYLLV 300
  301 YWSLLATLAC LVVLYQNAKR SSSESKKHQA PTIARKYFHF IVVATYIPGI ILDRTLLYVA 360
  361 ATICLTVFIF LEYVRYFRIK PLGHTLRSLL SLFLDERDSG PLILTHIYLL LGMSLPIWLV 420
  421 PRPCTQKGNL GGARALVPYA GVLSVGVGDT VASIFGSTMG EIHWPGTKKT FEGTMTSIFA 480
  481 QIISVALILI FDSGVDLNYS YVWILGSISI VSLLEAYTTQ IDNLLLPLYL LILLMA