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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|83771609
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.40
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELISTRPKK RRCVKERVRV TRACDACKRK KLRCSGTLPC SLCQRSSQEC EYTTSYTRGR  60
   61 LPPIPTLQKP TGNDNVAEHH IQQKSAPNID RMPASPDTEV IEGHSSSRVD GDASNLPSRD 120
  121 SPEPHQTDME GHYVGPSSGV SFLLRIQKRL HESISFPLNT PIFSFGDAPL PKSDPSFLLL 180
  181 PSKNEAKELV HRYFDFAFPT HRFLHQQQVE SWLEEFYNCL RVPHSLGPGD REIRALLLMV 240
  241 FAQASQYQPE SSSNLEDSHM RSVTSPYGSD PSSLCNSAVY FGASEHHLAA ETGPVRVTSV 300
  301 QARLAQCFYL LSQSRINHCW SLFGTTARLA IAIGLHRKRR REHPNTVNLI EQECSKRVFW 360
  361 CAYSLDNYLS AALGRPRIFH DDDIDQEYPE VAEDRQITLT SILPPTSSCQ SIMLAPVYHA 420
  421 KLSKIISGVL HDLYGIQRSS LTVQASAAAK YGAEMARWRK ELTGFLDLPN VNIMKVTYQR 480
  481 QYTVLNLAFY HAQILLYRPF LLKGFTLLTK EPSRRNDKLQ GTIDQNIKSC LEAAMKVVSI 540
  541 VRDLSTAGRM YRAFWVLQFT HYYAFSAVVV LYVHYIRSRS RQSTTDADLA YYMAGKQGQD 600
  601 DLASCGSQSS FSQRYVMVLE ELRKEAHKAT IRGNQESIDQ PPTNRPGPGG TENATSRLEE 660
  661 LDQLRNIAGS QDAEAYPAAS ERLDDILGSA QVSYRGVQPV GSFQFPAGPQ ESEVGSLQGI 720
  721 SPESYIADLA SWGEFDSLAA TGLGDFGVFF PRYGILSIAS FIPSRNVPRQ RIRIQIASSP 780
  781 CNTRCSNSQP KMSTGQVSAL LAPVVALNIW TFVMEAWMYK TRIPIYSKMN MKNTITKREL 840
  841 DAMTPASVRW KADNYNHLME QPTQFYAIAL VLALAGQDDK TNILLAWSYV AIRVAHSLVH 900
  901 STSNHIMSRF SIFVVSSVIL AVMTGRAALL VF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle