YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83771654
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIALEVWDT FIGDRLYAAL LPVSLSSSVS FPGFNHAANN TLSFFGASQP FIYEPATHLI  60
   61 YLEPSKYAYM SAWPRNNIYR QFLSFFLIVW IFGLITYFIS ATLSYIFIWD KTTVKHPKFL 120
  121 KNQIPMEIAQ TMGSMPIMSL LTAPFLVAEV RGYAKLYDGF SDEPFPYYSI IQFPLFIAFT 180
  181 DFCIYWIHRG LHHPLIYKSL HKPHHKWIMP SPFASHAFHP LDGWSQSVPY HVFPFIFPLQ 240
  241 KVAYVFLFGF INLWTVLIHD GEYVANSPVI NGAACHTMHH LYFNYNYGQF TTLWDRLGGS 300
  301 YRKPNEELFR RETKMDKEEW KKQTEEMESI LKDVEGDDDR KYLVEDESKK DL

Type	Start	End	Confidence
Cytoplasmic	1	15	0.85
Transmembrane Helix	16	38	0.76
Non-Cytoplasmic	39	85	0.84
Transmembrane Helix	86	109	0.90
Cytoplasmic	110	127	0.86
Transmembrane Helix	128	148	0.89
Non-Cytoplasmic	149	167	0.83
Transmembrane Helix	168	188	0.92
Cytoplasmic	189	206	0.82
Transmembrane Helix	207	221	0.63
Non-Cytoplasmic	222	236	0.56
Transmembrane Helix	237	258	0.70
Cytoplasmic	259	352	0.79