YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83765943
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGRTLPTFT SAEVESHNNA KSCYVTLGSK VYDITSFVDD HPGGGDLILE YAGRDVEEIL  60
   61 RDTVSHEHSE AAYDILEDSL IGFIASESTG KGASIDAAKA NGVGGTSGPV YAATGMSREE 120
  121 DLSVETDYSK DYQTHKFLDL NKPLLMQLWN GGFSKEFYLE QIHRPRHYKG GESAPLFGNF 180
  181 LEPLSKTAWY MVPIIWLPPV TYGTVLGFAG LGNVYAAAAY WIGGLALWTL IEYLMHRFLF 240
  241 HLDKYLPDNR VGLTLHFLLH GIHHYLPMDK YRLVMPPTLF VVLATPFWKL AQSVFFYNWY 300
  301 AALTVYCGGI FGYICYDTTH YWLHHRNLPP YYKGLKKYHL QHHFADFDNG FGVTSRFWDR 360
  361 VFGTELQTPA PKDVKTQ

Type	Start	End	Confidence
Cytoplasmic	1	187	0.96
Transmembrane Helix	188	210	0.84
Non-Cytoplasmic	211	216	0.66
Transmembrane Helix	217	236	0.89
Cytoplasmic	237	270	0.73
Transmembrane Helix	271	290	0.67
Non-Cytoplasmic	291	295	0.70
Transmembrane Helix	296	316	0.88
Cytoplasmic	317	377	0.85