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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|83773142
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDTPRLRSA FPQTPQTSQK SRAFYTSPSR SKQRDAGLRQ SPSEALPTAR DASLPLIPVE  60
   61 LIDAPSQRLY IVAFYVALNA WRLYESWKAS DDLDATWLFL KWACIDGVFL FGLQALRIPW 120
  121 LEWAFPTTLA IFLIHVVGNV FLMFRIPIPV GAWVSGIVKL AYDRELSISE RSVKPGDIIH 180
  181 NASLILGKQI VHILPEGSAV LNPDQTPLCI DSEKTTINLP IRINQTDPIL IELFRLDFTS 240
  241 GGNETITISS KQLKQMKRQA GKKNQGSGTD LHLDLLLPIR RPGIYRLQRV VDESNLDVRM 300
  301 RRSDALVVSC PRASIKSSHT HKCRGELSNL VLTVEGTPPL KIKYSRQVNR RDRGFSFQNI 360
  361 QPDYLRSPLL GQRNIGTLFN SQEPDVAWAQ SQNIEVPLNE SLNIGGEWLY AIEEVHDGCG 420
  421 NVANYTAFFN EVDRLPTKFL SQWHQFSVHE RPRLSLSGCN DQHFIEVARG DSVDLPVKFH 480
  481 QSGQGYDKDG PFSIVYSFNN NQETAGNMPG RVRELSLKNL GQKPQIKDPG WYVLDAISSQ 540
  541 FCSGEILEPS SCYLHNPPEP ELAVRYEKIF DKCANNPVGL LVDLDFTGSP PFRLRYVVEH 600
  601 SKGIETKTQL IEGLRTQLDL TPSEAGLYRY RFLDIADTVY APRPLKDKAP VLEQHVKPPA 660
  661 SAHFLGPREV RKACFGEPVS VDVALLGEAP WTLQYELVHN GKKTKYVLET ENEVSSIVTE 720
  721 KLVSGGEYNL VLTSVKDRSN CKRILKDSIQ IDARPKPPHV SFGEIEKSRK YSALQGSKVD 780
  781 IPLRLSGERP WTLKYKTSHD SLVVEKTLWQ ENSALTVGHE GRYELLEVTD ASCPGSVDQA 840
  841 AKIFEVSWIP RPRITAVDGS PVRAGGHKEK RDVCQGENDN LELRLSGSPP YSIKYEQQRK 900
  901 TTRGSPSVRL QNLRTVLHAA SMEMDTSEAG LYTYTFTEIG DNLYDHDPRS NPVVVTQKVN 960
  961 PLPSARFDAP GRIYGFCKED VSGEELIPIT LDGVPPFSLE ISIKHHSKAK PELVSISNIV1020
 1021 SNRHMLPIPR RHLDLGQHVV SIHKVRDARG CQRATENDAS SVRVAVSDVP TVIPLESKAD1080
 1081 YCVGERLSFS LSGHAPFEVF YTFDGVARKA TSRTTNFRRI AERPGVFTIT AVSDGASGKC1140
 1141 KAHKNVTKTI HEMPSVRISR GQTSVVDIHE GGEAELHFEF WGTPPFEFTY IRSSIARRGK1200
 1201 RAEILDIKHD ISYEHFKTIK TSDEGTYEVV AIKDKFCSVS SQTHLEKSEK PTVP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle