YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169780188
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEYLEESLR PPHAVPARKL RGTSRRRRRK GAWKKLLWVK QSCMDPDNYT DTETFLDHLQ  60
   61 RNPRVRPYDF WPLVADSTVI VQHVCSVAIF VCCFVGIVQG RVSPVSIVCW GSVGTAMGWI 120
  121 LWDSVPPLPP HDAPMISRLS SRNRQRLSTV KSAFLIYCAL LGLSPILKSL TKSTASDSIW 180
  181 AMSCWLLITN IFSFDYGSGE GAGATKFPAS LSTNAAVMAS TVLASRLPST THVFSLMLFS 240
  241 IEVFGLFPIF RRQLRHISWT GHVFLTLALV IAAGGAVGIT LRGGLTAAVV GSMLGSILTA 300
  301 LAMGGCSWWL ISLQKYKNVV TGPWDPARPI IRRHWD

Type	Start	End	Confidence
Cytoplasmic	1	78	0.70
Transmembrane Helix	79	98	0.89
Non-Cytoplasmic	99	105	0.51
Transmembrane Helix	106	126	0.85
Cytoplasmic	127	146	0.69
Transmembrane Helix	147	167	0.89
Non-Cytoplasmic	168	177	0.55
Transmembrane Helix	178	197	0.83
Cytoplasmic	198	203	0.55
Transmembrane Helix	204	224	0.59
Non-Cytoplasmic	225	230	0.71
Transmembrane Helix	231	250	0.92
Cytoplasmic	251	258	0.87
Transmembrane Helix	259	281	0.90
Non-Cytoplasmic	282	287	0.75
Transmembrane Helix	288	311	0.90
Cytoplasmic	312	336	0.96